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IMGVR_UViG_3300022931_000012-3300022931-Ga0233433_100009471

Arc-Vir

IMGVR_UViG_3300022931_000012-3300022931-Ga0233433_100009471

Identity

Kingdom:
archaea

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 72-153
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c5sA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.70 47.0 3.70e-01 100.0% 33.7%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.65 44.0 3.50e-01 100.0% 33.9%
4hrvA00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.64 59.0 4.85e-01 100.0% 64.7%
2cxhA01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.62 38.0 2.98e-01 100.0% 28.2%
3b34A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.52 42.0 4.16e-01 97.6% 83.5%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.51 44.0 3.94e-01 100.0% 68.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039688 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.74 47.0 4.94e-01 100.0% 70.7%
4961057 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.73 47.0 4.65e-01 100.0% 62.4%
3387344 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.70 59.0 4.84e-01 100.0% 51.7%
5059030 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.70 46.0 4.21e-01 100.0% 52.4%
4309043 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.69 46.0 4.35e-01 100.0% 57.0%
4956615 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.68 47.0 4.56e-01 100.0% 65.6%
4979613 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.67 46.0 4.46e-01 100.0% 62.1%
4366956 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.67 44.0 4.41e-01 100.0% 64.7%
4490233 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.67 47.0 4.26e-01 100.0% 54.5%
4136159 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.66 60.0 4.64e-01 100.0% 55.4%
5039232 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.66 47.0 4.39e-01 100.0% 61.0%
4971457 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.66 46.0 4.44e-01 100.0% 63.2%
4003438 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.64 43.0 4.08e-01 100.0% 57.0%
4523106 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.64 44.0 4.20e-01 100.0% 61.1%
5027375 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.64 43.0 3.96e-01 100.0% 52.7%
4947791 4143.1.1.12 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › ThiI 0.63 43.0 4.05e-01 100.0% 58.0%
5079619 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.62 42.0 4.25e-01 100.0% 68.2%
3838060 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.62 55.0 4.38e-01 100.0% 75.8%
4078209 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.58 52.0 4.33e-01 100.0% 81.4%
4019769 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 45.0 3.93e-01 100.0% 56.8%
5062662 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.56 47.0 3.66e-01 100.0% 71.9%
4978823 4143.1.1.1 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP 0.56 39.0 3.82e-01 100.0% 65.3%
3954245 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.54 39.0 3.49e-01 76.8% 95.8%
3601372 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.54 43.0 4.17e-01 100.0% 76.8%
4084414 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.54 40.0 3.41e-01 80.5% 94.3%
3476717 4143.1.1.0 ↗ a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like 0.52 43.0 3.98e-01 100.0% 70.0%
4468301 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.51 37.0 3.28e-01 76.8% 93.3%
4172565 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.51 44.0 3.29e-01 100.0% 84.1%
4196390 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.50 38.0 3.21e-01 80.5% 83.0%
D2 medium residues 1-65
PDB
Domain cluster: representative