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IMGVR_UViG_3300022931_000206-3300022931-Ga0233433_100107055
Arc-VirIMGVR_UViG_3300022931_000206-3300022931-Ga0233433_100107055
Identity
- Kingdom:
- archaea
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-159
Domain cluster:
rep: DGJ7_scaffold_2_2069_prodigal-single.1__X__X__00033__D4-134
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 31.0 | 4.32e-01 | 87.0% | 96.9% |
| 2l72A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 42.0 | 4.42e-01 | 91.6% | 74.6% |
| 2og4A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.62 | 46.0 | 3.72e-01 | 77.1% | 77.2% |
| 7whgG02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 40.0 | 4.58e-01 | 91.6% | 92.4% |
| 4g1iA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 30.0 | 3.89e-01 | 89.3% | 87.0% |
| 2b78A02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.59 | 42.0 | 4.72e-01 | 93.1% | 94.1% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.58 | 28.0 | 3.80e-01 | 88.5% | 95.2% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.53 | 38.0 | 4.07e-01 | 100.0% | 86.7% |
| 2rrlA01 | 3.30.750.140 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.52 | 38.0 | 4.01e-01 | 90.1% | 85.2% |
| 1xmtA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 35.0 | 3.99e-01 | 95.4% | 93.7% |
| 1cm0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 44.0 | 4.15e-01 | 94.7% | 98.8% |
| 4fd5A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 43.0 | 3.63e-01 | 92.4% | 99.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979017 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.63 | 32.0 | 4.11e-01 | 90.1% | 85.3% |
| 5009868 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.61 | 36.0 | 4.07e-01 | 92.4% | 76.0% |
| 5072012 | 2008.1.1.3 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc | 0.58 | 31.0 | 3.64e-01 | 87.0% | 73.3% |
| 1673882 | 3261.1.1.1 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON | 0.57 | 29.0 | 3.70e-01 | 89.3% | 86.1% |
| 4662378 | 1032.1.1.0 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain | 0.56 | 46.0 | 2.80e-01 | 88.5% | 46.6% |
| 4411671 | 3261.1.1.2 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › Yop-YscD_ppl_1st | 0.56 | 28.0 | 3.63e-01 | 88.5% | 90.8% |
| 4990760 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.56 | 29.0 | 3.64e-01 | 88.5% | 88.6% |
| 3393164 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.53 | 41.0 | 2.98e-01 | 81.7% | 79.1% |
| 3641547 | 327.10.1.9 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N-like_STI | 0.53 | 32.0 | 3.75e-01 | 87.8% | 85.6% |
| 3999486 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.53 | 35.0 | 4.01e-01 | 83.2% | 89.0% |
| 3607869 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.53 | 40.0 | 3.06e-01 | 79.4% | 72.5% |
| 4930787 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.52 | 38.0 | 4.04e-01 | 100.0% | 89.1% |
| 4954934 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.52 | 33.0 | 3.18e-01 | 98.5% | 53.5% |
| 3743390 | 327.5.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like | 0.52 | 37.0 | 3.78e-01 | 96.2% | 74.6% |
| 4635650 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.52 | 42.0 | 3.04e-01 | 87.0% | 34.9% |
| None | — | 0.52 | 42.0 | 3.08e-01 | 87.0% | 36.9% | |
| 4140697 | 2003.1.5.213 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS, tRNA_U5-meth_tr | 0.51 | 42.0 | 3.06e-01 | 87.0% | 36.6% |
| 3505358 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 3.28e-01 | 87.0% | 46.8% |
| 2114439 | 246.2.1.12 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › WipA_Phos | 0.51 | 42.0 | 3.28e-01 | 91.6% | 87.8% |
| 4327911 | 2003.1.5.156 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_31 | 0.51 | 42.0 | 3.01e-01 | 87.0% | 34.9% |
| 5082574 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 44.0 | 4.11e-01 | 98.5% | 76.2% |
| 4123589 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.51 | 42.0 | 2.99e-01 | 87.0% | 34.1% |
| 3628154 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.51 | 41.0 | 3.10e-01 | 86.3% | 84.6% |
| 4872964 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.51 | 36.0 | 2.99e-01 | 73.3% | 70.8% |
| 4937381 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.51 | 33.0 | 3.74e-01 | 93.9% | 88.0% |
| 4048956 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.50 | 42.0 | 3.85e-01 | 98.5% | 67.4% |
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.50 | 42.0 | 3.13e-01 | 90.8% | 76.1% |
D2
high
residues 175-340
Domain cluster:
rep: PH2015_18_scaffold_2_prodigal-single.1__X__X__00357__D3-170
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ftrA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 40.0 | 4.91e-01 | 75.9% | 98.1% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.54e-01 | 85.5% | 100.0% |
| 2faoA01 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.55 | 44.0 | 3.70e-01 | 85.5% | 77.3% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.53 | 37.0 | 3.76e-01 | 89.8% | 72.2% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840041 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.71 | 65.0 | 5.92e-01 | 95.8% | 75.7% |
| 4933881 | 304.6.1.1 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C | 0.65 | 40.0 | 3.45e-01 | 84.9% | 39.6% |
| 5184 | 304.4.1.11 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD | 0.65 | 40.0 | 4.91e-01 | 75.9% | 98.1% |
| 3973622 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.64 | 41.0 | 4.95e-01 | 76.5% | 97.3% |
| 4538250 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.64 | 31.0 | 3.47e-01 | 72.9% | 56.3% |
| 1312370 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.63 | 42.0 | 4.97e-01 | 99.4% | 99.1% |
| 4396929 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.62 | 39.0 | 4.69e-01 | 84.3% | 95.5% |
| 4633863 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.62 | 41.0 | 4.81e-01 | 99.4% | 97.4% |
| 4554484 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.61 | 40.0 | 4.30e-01 | 86.1% | 75.2% |
| 4377632 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.59 | 44.0 | 4.78e-01 | 97.0% | 94.1% |
| 4025700 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 35.0 | 4.15e-01 | 75.9% | 88.2% |
| 3956965 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 48.0 | 4.78e-01 | 88.6% | 89.0% |
| 4951347 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 48.0 | 5.03e-01 | 96.4% | 96.8% |
| 3958521 | 304.4.1.10 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF1330 | 0.57 | 35.0 | 4.07e-01 | 74.7% | 85.0% |
| 4974732 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.56 | 45.0 | 4.54e-01 | 97.0% | 84.1% |
| 5055923 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 38.0 | 4.32e-01 | 78.9% | 91.2% |
| 5027463 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.56 | 47.0 | 4.80e-01 | 98.2% | 90.9% |
| 3721754 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 35.0 | 4.05e-01 | 84.9% | 85.8% |
| 5016760 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.56 | 48.0 | 4.94e-01 | 95.2% | 95.6% |
| 3319663 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.56 | 39.0 | 4.20e-01 | 72.3% | 96.6% |
| 3273461 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.56 | 39.0 | 3.95e-01 | 89.8% | 72.5% |
| 4199063 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 46.0 | 4.72e-01 | 95.2% | 91.3% |
| 4995323 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 49.0 | 4.83e-01 | 97.0% | 95.6% |
| 3491668 | 2011.1.1.21 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 | 0.54 | 38.0 | 3.03e-01 | 70.5% | 72.6% |
| 4969988 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.54 | 48.0 | 4.78e-01 | 96.4% | 96.6% |
| 4266983 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.54 | 46.0 | 4.65e-01 | 95.8% | 92.7% |
| 4331294 | 3325.1.1.1 ↗ | a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter | 0.54 | 34.0 | 3.91e-01 | 70.5% | 86.7% |
| 4048379 | 304.55.1.24 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › DUF1424 | 0.53 | 44.0 | 4.07e-01 | 86.1% | 74.1% |
| 4527096 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.53 | 47.0 | 4.74e-01 | 95.8% | 97.1% |
| 4049544 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.53 | 46.0 | 4.61e-01 | 95.2% | 90.0% |
| 3968511 | 304.45.1.1 ↗ | a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK | 0.52 | 45.0 | 4.43e-01 | 91.6% | 86.9% |
| 4519565 | 4139.1.1.0 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like | 0.52 | 30.0 | 3.41e-01 | 77.7% | 72.8% |
| 3788206 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 40.0 | 4.15e-01 | 84.9% | 87.1% |