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IMGVR_UViG_3300023022_000049-3300023022-Ga0233362_10005974
Arc-VirIMGVR_UViG_3300023022_000049-3300023022-Ga0233362_10005974
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-118
Domain cluster:
rep: MF356679.1__ASR76345.1__D6_42__00042__D3-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01051.28 best | Rep3_N | 71.3 | 1.60e-19 | 100.0% | 76.6% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1repC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 74.0 | 7.11e-01 | 100.0% | 84.6% |
| 1hkqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 74.0 | 7.09e-01 | 94.6% | 88.8% |
| 2nraC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 76.0 | 6.79e-01 | 100.0% | 82.0% |
| 3bwgB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 45.0 | 5.49e-01 | 82.9% | 97.1% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 49.0 | 5.51e-01 | 82.9% | 90.5% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.72 | 52.0 | 5.78e-01 | 82.9% | 95.5% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 55.0 | 6.02e-01 | 85.6% | 100.0% |
| 1ucrB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 44.0 | 5.22e-01 | 82.9% | 94.7% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 41.0 | 4.95e-01 | 79.3% | 95.7% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 41.0 | 4.54e-01 | 91.0% | 77.5% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 49.0 | 5.47e-01 | 99.1% | 100.0% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.09e-01 | 89.2% | 51.6% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 46.0 | 4.83e-01 | 91.0% | 81.2% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.62 | 39.0 | 4.51e-01 | 89.2% | 89.7% |
| 2qbyB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 42.0 | 4.62e-01 | 82.9% | 84.6% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.60 | 39.0 | 4.20e-01 | 91.0% | 78.5% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.60 | 41.0 | 3.72e-01 | 100.0% | 51.0% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 33.0 | 3.43e-01 | 70.3% | 57.8% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.57 | 34.0 | 3.63e-01 | 71.2% | 67.0% |
| 2mtfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.08e-01 | 82.9% | 74.6% |
| 2rt3A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 32.0 | 3.45e-01 | 75.7% | 64.9% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 26.0 | 3.28e-01 | 83.8% | 75.7% |
| 2ej9A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 37.0 | 3.14e-01 | 72.1% | 62.2% |
| 2afaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 39.0 | 2.68e-01 | 80.2% | 28.7% |
| 2p1wA01 | 3.30.2430.10 | Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase | 0.52 | 42.0 | 3.65e-01 | 90.1% | 79.0% |
| 3thtA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 33.0 | 3.50e-01 | 90.1% | 75.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3986771 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.89 | 85.0 | 7.97e-01 | 100.0% | 90.8% |
| 5082315 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.84 | 79.0 | 7.45e-01 | 100.0% | 90.8% |
| 4474222 | 101.1.2.765 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrfA | 0.83 | 78.0 | 5.78e-01 | 100.0% | 58.8% |
| 2618 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.83 | 74.0 | 7.09e-01 | 94.6% | 88.8% |
| 2772480 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.83 | 74.0 | 7.08e-01 | 100.0% | 84.1% |
| 4643976 | 101.1.2.654 ↗ | alpha arrays › HTH › HTH › winged helix domain › RPA | 0.80 | 74.0 | 6.41e-01 | 99.1% | 93.3% |
| 5073913 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 46.0 | 5.85e-01 | 83.8% | 100.0% |
| 5083609 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 73.0 | 7.11e-01 | 100.0% | 98.3% |
| 2061059 | 101.1.2.131 ↗ | alpha arrays › HTH › HTH › winged helix domain › RctB_central | 0.77 | 70.0 | 5.85e-01 | 97.3% | 95.0% |
| 3588764 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.77 | 70.0 | 6.81e-01 | 99.1% | 94.2% |
| 3946400 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.75 | 69.0 | 5.86e-01 | 99.1% | 96.6% |
| 4331694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 41.0 | 5.44e-01 | 79.3% | 100.0% |
| 4192947 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.75 | 69.0 | 5.97e-01 | 99.1% | 97.0% |
| 4984063 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 48.0 | 5.12e-01 | 86.5% | 78.9% |
| 3785068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 42.0 | 4.95e-01 | 81.1% | 86.7% |
| 3588765 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.70 | 63.0 | 6.40e-01 | 100.0% | 100.0% |
| 3496383 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 5.35e-01 | 84.7% | 83.5% |
| 3738672 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 45.0 | 4.93e-01 | 82.0% | 84.4% |
| 2329747 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 40.0 | 4.32e-01 | 82.9% | 72.8% |
| 3575012 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 38.0 | 4.44e-01 | 84.7% | 84.0% |
| 5053793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 57.0 | 5.63e-01 | 94.6% | 91.3% |
| 3715568 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 50.0 | 5.30e-01 | 84.7% | 96.8% |
| 3484540 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.63 | 52.0 | 3.22e-01 | 91.0% | 39.4% |
| 3970435 | 101.1.2.379 ↗ | alpha arrays › HTH › HTH › winged helix domain › NGO1945_C | 0.62 | 49.0 | 4.78e-01 | 82.0% | 92.4% |
| 3472288 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.62 | 52.0 | 3.24e-01 | 91.0% | 40.7% |
| 1891444 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 39.0 | 4.00e-01 | 88.3% | 64.2% |
| 3602011 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 53.0 | 4.59e-01 | 93.7% | 81.2% |
| 3614606 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 4.55e-01 | 90.1% | 81.0% |
| 3704811 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 51.0 | 4.96e-01 | 92.8% | 84.0% |
| 4992410 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 43.0 | 4.03e-01 | 89.2% | 63.0% |
| 4954563 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.56 | 41.0 | 4.56e-01 | 97.3% | 100.0% |
| 5076159 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.54 | 39.0 | 2.97e-01 | 100.0% | 31.5% |
D2
high
residues 136-220
Domain cluster:
rep: aot2015-NO19_SRR1761693_USA_trim_clean_trim_clean_scaffold_5_curated_closed_complete_reversed_prodigal-single.1__X__X__00003__D161-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21205.4 best | Rep3_C | 62.7 | 4.30e-17 | 68.2% | 100.0% |
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.92 | 87.0 | 8.51e-01 | 100.0% | 97.8% |
| 3zq7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 57.0 | 5.42e-01 | 100.0% | 74.3% |
| 6lbsB01 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.70 | 57.0 | 5.94e-01 | 95.3% | 97.5% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.66 | 50.0 | 5.03e-01 | 96.5% | 79.3% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 5.32e-01 | 97.6% | 88.1% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.66 | 41.0 | 4.23e-01 | 78.8% | 67.1% |
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.64 | 53.0 | 5.21e-01 | 97.6% | 84.4% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.64 | 54.0 | 3.98e-01 | 96.5% | 85.1% |
| 2jdjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 43.0 | 4.09e-01 | 78.8% | 58.7% |
| 4atnA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 50.0 | 3.94e-01 | 95.3% | 40.7% |
| 4ne4A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 47.0 | 3.87e-01 | 87.1% | 42.5% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 47.0 | 4.74e-01 | 96.5% | 84.9% |
| 3eeaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 45.0 | 3.69e-01 | 78.8% | 63.4% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 41.0 | 3.98e-01 | 80.0% | 62.5% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.60 | 43.0 | 4.00e-01 | 78.8% | 59.3% |
| 2ch0A01 | 1.10.10.1180 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain | 0.60 | 50.0 | 4.87e-01 | 95.3% | 85.7% |
| 4z7eA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 46.0 | 3.79e-01 | 87.1% | 44.6% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 46.0 | 4.67e-01 | 100.0% | 91.5% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 4.40e-01 | 96.5% | 75.0% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 48.0 | 3.31e-01 | 94.1% | 28.6% |
| 1j4wA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 38.0 | 4.05e-01 | 78.8% | 78.4% |
| 3b8pA00 | 3.30.1890.10 | Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like | 0.58 | 43.0 | 3.28e-01 | 80.0% | 41.5% |
| 5hl8C00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.57 | 44.0 | 4.61e-01 | 92.9% | 88.6% |
| 3mtiB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 45.0 | 3.66e-01 | 96.5% | 42.2% |
| 3cwfA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 41.0 | 3.80e-01 | 77.6% | 59.3% |
| 1khmA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.57 | 38.0 | 3.82e-01 | 80.0% | 66.3% |
| 3e23A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 49.0 | 3.76e-01 | 96.5% | 43.4% |
| 5yd0D01 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.57 | 47.0 | 3.96e-01 | 94.1% | 59.1% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 47.0 | 3.52e-01 | 94.1% | 35.6% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.56 | 42.0 | 3.78e-01 | 80.0% | 58.5% |
| 5xgbA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 42.0 | 3.74e-01 | 78.8% | 83.9% |
| 5cvdB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.43e-01 | 94.1% | 35.4% |
| 1if1B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 49.0 | 4.59e-01 | 100.0% | 100.0% |
| 7dluA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 3.72e-01 | 78.8% | 72.2% |
| 2onlC01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 39.0 | 3.97e-01 | 85.9% | 75.6% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 38.0 | 3.76e-01 | 77.6% | 69.3% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.54 | 40.0 | 3.81e-01 | 78.8% | 68.0% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.54 | 36.0 | 3.11e-01 | 81.2% | 42.3% |
| 2dulA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 44.0 | 3.10e-01 | 95.3% | 30.2% |
| 3fo3A02 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.53 | 38.0 | 2.60e-01 | 76.5% | 88.5% |
| 2bjnB00 | 3.30.1380.20 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 | 0.53 | 45.0 | 3.84e-01 | 97.6% | 68.9% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.51e-01 | 78.8% | 57.9% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.52 | 32.0 | 3.53e-01 | 80.0% | 77.6% |
| 4af3A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.88e-01 | 85.9% | 78.4% |
| 1fs0G01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.52 | 39.0 | 3.45e-01 | 81.2% | 85.4% |
| 2vlgC00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 39.0 | 3.67e-01 | 78.8% | 98.0% |
| 5w2fA01 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.51 | 34.0 | 3.41e-01 | 84.7% | 67.4% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4620040 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.96 | 92.0 | 8.45e-01 | 100.0% | 81.9% |
| 5082316 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.93 | 87.0 | 8.34e-01 | 98.8% | 91.6% |
| 1175570 | 101.1.2.17 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.92 | 88.0 | 7.50e-01 | 100.0% | 70.6% |
| 3036035 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.92 | 87.0 | 7.98e-01 | 100.0% | 84.8% |
| 5083610 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.91 | 86.0 | 7.91e-01 | 100.0% | 85.7% |
| 3946059 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.91 | 83.0 | 8.10e-01 | 97.6% | 90.0% |
| 3985754 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.91 | 86.0 | 8.07e-01 | 100.0% | 89.0% |
| 4563576 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.90 | 86.0 | 8.20e-01 | 100.0% | 89.5% |
| 3588765 | 101.1.2.187 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_C | 0.87 | 81.0 | 7.34e-01 | 100.0% | 88.2% |
| 3947737 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 72.0 | 6.63e-01 | 100.0% | 81.8% |
| 3267633 | 101.1.2.122 ↗ | alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K | 0.78 | 51.0 | 5.82e-01 | 94.1% | 93.3% |
| 3509317 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 71.0 | 6.29e-01 | 100.0% | 93.3% |
| 4062444 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.73 | 43.0 | 4.34e-01 | 78.8% | 58.8% |
| 3211626 | 304.162.1.2 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M | 0.70 | 45.0 | 4.52e-01 | 78.8% | 64.7% |
| 4935371 | 327.11.2.87 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › FLAD1_M | 0.69 | 41.0 | 4.49e-01 | 80.0% | 71.4% |
| 5005033 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.69 | 43.0 | 4.50e-01 | 78.8% | 67.5% |
| 3267490 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.68 | 58.0 | 4.26e-01 | 97.6% | 34.5% |
| 4819807 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.68 | 50.0 | 5.17e-01 | 80.0% | 83.3% |
| 5025783 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.68 | 41.0 | 4.12e-01 | 78.8% | 60.0% |
| 3511169 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.67 | 42.0 | 4.21e-01 | 80.0% | 62.4% |
| 4940261 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.66 | 50.0 | 5.42e-01 | 98.8% | 100.0% |
| 3788427 | 101.1.2.207 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH | 0.65 | 57.0 | 5.43e-01 | 98.8% | 83.0% |
| 3781954 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.64 | 40.0 | 3.88e-01 | 78.8% | 55.8% |
| 3190328 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.63 | 47.0 | 4.58e-01 | 94.1% | 73.1% |
| 3413597 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.62 | 55.0 | 3.66e-01 | 98.8% | 34.5% |
| 3174361 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.62 | 54.0 | 3.92e-01 | 97.6% | 34.5% |
| 4947850 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 53.0 | 5.02e-01 | 97.6% | 82.9% |
| 3486254 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 40.0 | 4.18e-01 | 78.8% | 71.2% |
| 4223968 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.61 | 35.0 | 3.58e-01 | 80.0% | 57.5% |
| 3579786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 53.0 | 5.07e-01 | 100.0% | 90.8% |
| 3677688 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 38.0 | 3.23e-01 | 78.8% | 36.7% |
| 166476 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.60 | 41.0 | 3.96e-01 | 80.0% | 61.9% |
| 3887336 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.59 | 52.0 | 3.85e-01 | 98.8% | 38.7% |
| 4990439 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.59 | 45.0 | 4.26e-01 | 81.2% | 71.0% |
| 3700237 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 50.0 | 4.44e-01 | 98.8% | 64.6% |
| 3821254 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.59 | 50.0 | 4.51e-01 | 100.0% | 67.2% |
| 5003912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 51.0 | 4.23e-01 | 100.0% | 75.6% |
| 3657248 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.59 | 51.0 | 4.76e-01 | 97.6% | 78.1% |
| 3713489 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 3.98e-01 | 100.0% | 70.5% |
| 3501318 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.58 | 51.0 | 3.31e-01 | 98.8% | 30.5% |
| 3586334 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.57 | 40.0 | 4.00e-01 | 77.6% | 70.0% |
| 3227174 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.57 | 38.0 | 3.73e-01 | 76.5% | 63.3% |
| 3614121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.82e-01 | 98.8% | 100.0% |
| 3735293 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.57 | 49.0 | 3.51e-01 | 97.6% | 33.1% |
| 4980708 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 43.0 | 3.59e-01 | 78.8% | 72.1% |
| 4971711 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 49.0 | 4.38e-01 | 100.0% | 73.6% |
| 4946218 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 43.0 | 4.06e-01 | 100.0% | 68.6% |
| 5040162 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.55 | 46.0 | 3.07e-01 | 95.3% | 61.3% |
| 5076562 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 43.0 | 4.21e-01 | 91.8% | 78.0% |
| 4609721 | 1.1.5.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S46 | 0.55 | 40.0 | 2.60e-01 | 78.8% | 31.5% |
| 5065308 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.54 | 48.0 | 4.31e-01 | 100.0% | 73.3% |
| 5072106 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 46.0 | 3.48e-01 | 96.5% | 74.3% |
| 4013676 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 4.26e-01 | 100.0% | 85.8% |
| 3495920 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.54 | 41.0 | 3.87e-01 | 80.0% | 72.0% |
| 4991352 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 44.0 | 3.15e-01 | 94.1% | 34.7% |
| 3935690 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.53 | 46.0 | 4.06e-01 | 97.6% | 72.3% |
| 5043656 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.53 | 39.0 | 3.81e-01 | 78.8% | 72.6% |
| 4931451 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 39.0 | 3.59e-01 | 77.6% | 79.1% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.53 | 38.0 | 3.45e-01 | 77.6% | 55.8% |
| 3605901 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 45.0 | 4.23e-01 | 100.0% | 89.1% |
| 5012937 | 304.116.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 | 0.52 | 38.0 | 3.74e-01 | 78.8% | 72.6% |
| 4945440 | 304.116.1.5 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › DUF460 | 0.52 | 39.0 | 3.74e-01 | 81.2% | 71.0% |
| 4950080 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 44.0 | 3.75e-01 | 100.0% | 74.5% |
| 3603223 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 44.0 | 3.74e-01 | 98.8% | 66.7% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.50 | 41.0 | 3.94e-01 | 91.8% | 82.8% |