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IMGVR_UViG_3300023051_000078-3300023051-Ga0233379_10009866
Arc-VirIMGVR_UViG_3300023051_000078-3300023051-Ga0233379_10009866
Identity
- Kingdom:
- archaea
Quality
57.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-49
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 48.0 | 2.85e-01 | 100.0% | 46.6% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.55 | 38.0 | 3.54e-01 | 81.2% | 59.7% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 41.0 | 3.29e-01 | 97.9% | 53.3% |
| 2e9hA02 | 2.20.25.350 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 34.0 | 3.49e-01 | 81.2% | 70.5% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 43.0 | 3.22e-01 | 100.0% | 92.1% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.02e-01 | 72.9% | 74.4% |
| 4c08A02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.51 | 38.0 | 2.74e-01 | 91.7% | 96.7% |
| 5nslA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 38.0 | 2.36e-01 | 100.0% | 51.9% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.51 | 38.0 | 3.36e-01 | 91.7% | 81.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3410450 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 34.0 | 4.06e-01 | 75.0% | 96.0% |
| 4651135 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.57 | 39.0 | 3.33e-01 | 72.9% | 90.6% |
| 3725091 | 5.1.5.93 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N | 0.57 | 48.0 | 2.80e-01 | 100.0% | 36.8% |
| 2447618 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.57 | 45.0 | 2.92e-01 | 97.9% | 57.7% |
| 3255381 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.56 | 45.0 | 2.70e-01 | 97.9% | 15.2% |
| 2595099 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.56 | 41.0 | 2.76e-01 | 81.2% | 23.0% |
| 4052313 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.54 | 45.0 | 3.60e-01 | 100.0% | 80.0% |
| 3489126 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 3.56e-01 | 100.0% | 89.5% |
| 4054258 | 2484.1.1.47 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL | 0.52 | 42.0 | 3.06e-01 | 91.7% | 88.6% |
| 3591691 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 38.0 | 3.27e-01 | 89.6% | 82.1% |
| 3435394 | 2007.5.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase | 0.52 | 33.0 | 2.42e-01 | 83.3% | 18.8% |
| 3692938 | 10.12.1.30 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 3-HAO | 0.51 | 42.0 | 2.91e-01 | 100.0% | 66.8% |
| 3385224 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.51 | 37.0 | 2.86e-01 | 79.2% | 42.9% |
| 3381094 | 304.8.1.64 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P | 0.51 | 34.0 | 2.19e-01 | 72.9% | 19.8% |
| 3262294 | 304.9.1.9 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 | 0.50 | 39.0 | 3.10e-01 | 100.0% | 69.2% |
D2
high
residues 174-208_210-231_233-236
D3
medium
residues 58-87_90-157
D4
medium
residues 253-296_298-325_327-364_366-370_372-378_381-394