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IMGVR_UViG_3300023109_003620-3300023109-Ga0233432_100268061

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300023109_003620-3300023109-Ga0233432_100268061 ↗
Kingdom:: archaea

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-46

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x9bA00	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.63	45.0	4.31e-01	84.1%	64.2%
2ffjA02	1.10.285.20	Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2	0.60	40.0	3.58e-01	86.4%	47.7%
4heoA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.59	47.0	4.43e-01	88.6%	74.5%
1oksA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.58	49.0	4.68e-01	100.0%	81.1%
2f33A01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.56	42.0	3.70e-01	84.1%	60.6%
3g2bA00	1.10.10.1150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD)	0.56	41.0	3.32e-01	81.8%	53.3%
2mvtA00	1.10.60.50	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 ›	0.56	38.0	3.74e-01	79.5%	63.8%
2ftxA00	3.30.457.50	Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25	0.55	44.0	3.61e-01	93.2%	66.3%
2m35A00	1.10.60.50	Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 ›	0.55	39.0	3.81e-01	100.0%	69.2%
3iayA07	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.53	40.0	2.82e-01	84.1%	94.1%
6he1B01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.52	44.0	3.90e-01	95.5%	87.5%
4mp4A01	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.52	39.0	3.05e-01	79.5%	87.6%
1wh4A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.50	41.0	3.32e-01	97.7%	95.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3807164	101.1.11.3 ↗	alpha arrays › HTH › HTH › Ribbon-helix-helix › TCP	0.59	41.0	3.84e-01	81.8%	60.0%
3251443	4026.1.1.0 ↗	a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145)	0.55	46.0	3.40e-01	97.7%	88.8%
1503071	632.2.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA	0.54	43.0	4.13e-01	97.7%	76.8%
3438405	386.1.1.310 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1677	0.54	39.0	3.44e-01	79.5%	89.9%
3396550	3121.1.1.0 ↗	a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain	0.52	43.0	3.56e-01	97.7%	50.6%
2051313	2007.1.14.5 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Peripla_BP_2	0.52	42.0	3.02e-01	100.0%	73.2%

D2 high residues 61-168

PDB

Domain cluster: rep: IMGVR_UViG_3300017910_001187-3300017910-Ga0192369_10652626__D362-481