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IMGVR_UViG_3300023203_000752-3300023203-Ga0255812_1039812049
Arc-VirIMGVR_UViG_3300023203_000752-3300023203-Ga0255812_1039812049
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-102
Domain cluster:
rep: IMGVR_UViG_3300029825_000420-3300029825-Ga0134835_100419512__D2-101
D2
high
residues 180-341
Domain cluster:
rep: IMGVR_UViG_3300006225_000040-3300006225-Ga0082206_10209618__D79-90_92-98_100-135_137-138_142-144_147-149_151-152_154-177_200-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09250.17 best | Prim-Pol | 46.5 | 7.70e-12 | 93.8% | 94.3% |
D3
high
residues 367-455
Domain cluster:
rep: IMGVR_UViG_3300033153_015493-3300033153-Ga0366824_101405734__D185-314
D4
high
residues 500-599
Domain cluster:
rep: IMGVR_UViG_3300033990_000324-3300033990-Ga0373184_0002060_21170_24340__D289-396
D5
high
residues 907-1007
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00431__D3-86
D6
medium
residues 640-668_680-695_829-895
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8kG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.62 | 35.0 | 3.26e-01 | 97.3% | 43.2% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.59 | 36.0 | 3.63e-01 | 83.0% | 58.8% |
| 5ko4A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 30.0 | 3.15e-01 | 82.1% | 54.5% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 42.0 | 4.22e-01 | 86.6% | 99.1% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.52 | 35.0 | 3.19e-01 | 90.2% | 52.0% |
| 5tpmB00 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.52 | 41.0 | 3.82e-01 | 84.8% | 96.5% |
| 1jmuB03 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.51 | 42.0 | 3.77e-01 | 88.4% | 89.8% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.51 | 35.0 | 3.60e-01 | 83.9% | 73.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.61 | 40.0 | 2.86e-01 | 88.4% | 22.7% | |
| None | — | 0.55 | 45.0 | 3.37e-01 | 100.0% | 35.7% | |
| 3564017 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 43.0 | 2.88e-01 | 86.6% | 66.9% |
| 3833252 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.52 | 37.0 | 3.43e-01 | 81.2% | 56.6% |
| 3297362 | 5067.1.1.13 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ALMT | 0.52 | 36.0 | 3.18e-01 | 70.5% | 80.6% |
| 4021291 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.51 | 45.0 | 3.58e-01 | 96.4% | 72.4% |
| 3806047 | 5050.1.1.26 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UVB_sens_prot | 0.51 | 44.0 | 3.38e-01 | 96.4% | 53.2% |
| 3686747 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.50 | 44.0 | 3.40e-01 | 96.4% | 53.2% |
| 3774099 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 44.0 | 3.49e-01 | 95.5% | 62.7% |
D7
medium
residues 669-679_696-828_896-906
Domain cluster:
rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764