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IMGVR_UViG_3300023203_000752-3300023203-Ga0255812_1039812054
Arc-VirIMGVR_UViG_3300023203_000752-3300023203-Ga0255812_1039812054
Identity
- Kingdom:
- archaea
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-70
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.67 | 49.0 | 3.97e-01 | 79.0% | 86.5% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.67 | 47.0 | 4.06e-01 | 77.4% | 97.2% |
| 1s6lA02 | 3.15.10.60 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase | 0.62 | 55.0 | 4.32e-01 | 98.4% | 76.0% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 39.0 | 4.04e-01 | 91.9% | 77.2% |
| 5lddC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 3.28e-01 | 85.5% | 85.1% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 40.0 | 3.50e-01 | 74.2% | 93.6% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 41.0 | 3.57e-01 | 79.0% | 61.6% |
| 2fz0A00 | 3.30.450.230 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Vacuolar R-SNARE Nyv1, longin domain | 0.55 | 42.0 | 3.25e-01 | 83.9% | 39.6% |
| 3lxuX01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.55 | 43.0 | 2.80e-01 | 90.3% | 93.7% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.54 | 43.0 | 3.29e-01 | 96.8% | 73.5% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 3.85e-01 | 95.2% | 61.1% |
| 6r9rA01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.54 | 36.0 | 2.59e-01 | 71.0% | 85.2% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.52 | 44.0 | 4.16e-01 | 95.2% | 86.5% |
| 5fbhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 36.0 | 2.61e-01 | 72.6% | 29.4% |
| 1t0fA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 39.0 | 3.00e-01 | 85.5% | 54.3% |
| 1t6eX01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 45.0 | 3.31e-01 | 100.0% | 75.9% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.51 | 46.0 | 4.10e-01 | 100.0% | 94.2% |
| 2bn8A00 | 3.30.730.20 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA | 0.51 | 35.0 | 3.45e-01 | 90.3% | 68.7% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.50 | 37.0 | 2.91e-01 | 82.3% | 58.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3774525 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.68 | 49.0 | 3.61e-01 | 79.0% | 61.7% |
| 3260588 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.68 | 48.0 | 5.22e-01 | 85.5% | 94.0% |
| None | — | 0.68 | 49.0 | 3.64e-01 | 79.0% | 61.8% | |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.65 | 47.0 | 3.84e-01 | 79.0% | 89.6% |
| 3212945 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.65 | 42.0 | 4.30e-01 | 71.0% | 69.5% |
| 3902096 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.65 | 47.0 | 3.59e-01 | 79.0% | 69.7% |
| 3596234 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 38.0 | 4.32e-01 | 72.6% | 87.5% |
| 4964333 | 375.1.1.339 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 | 0.63 | 37.0 | 4.33e-01 | 72.6% | 90.0% |
| 4211951 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.61 | 42.0 | 3.89e-01 | 79.0% | 55.0% |
| 4962623 | 375.1.1.339 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 | 0.60 | 36.0 | 4.01e-01 | 72.6% | 80.0% |
| 3904071 | 214.1.1.11 ↗ | a+b two layers › SH2 › SH2 › SH2 › PF27628 | 0.60 | 42.0 | 3.46e-01 | 74.2% | 45.8% |
| 3930705 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.59 | 45.0 | 3.90e-01 | 83.9% | 64.0% |
| 3557649 | 4.8.1.20 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N | 0.59 | 50.0 | 4.24e-01 | 95.2% | 69.5% |
| 3785325 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.58 | 50.0 | 4.46e-01 | 98.4% | 85.6% |
| 3402082 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 43.0 | 3.74e-01 | 82.3% | 68.0% |
| 3750522 | 4.1.1.218 ↗ | beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N | 0.58 | 49.0 | 4.07e-01 | 95.2% | 66.4% |
| 3948387 | 1104.1.1.1 ↗ | a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 | 0.57 | 43.0 | 3.30e-01 | 80.6% | 76.0% |
| 3640089 | 206.1.1.34 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase_fungal | 0.57 | 48.0 | 3.07e-01 | 93.5% | 53.7% |
| 4112874 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.57 | 41.0 | 3.36e-01 | 96.8% | 39.2% |
| 4138663 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.57 | 42.0 | 4.21e-01 | 88.7% | 78.5% |
| 4440689 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.57 | 39.0 | 3.87e-01 | 74.2% | 69.2% |
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.55 | 42.0 | 4.41e-01 | 88.7% | 96.4% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 4.17e-01 | 90.3% | 78.3% |
| 4117020 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 41.0 | 4.15e-01 | 98.4% | 88.3% |
| 5063011 | 219.1.1.36 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 | 0.53 | 43.0 | 3.19e-01 | 100.0% | 72.0% |
| 3640675 | 2008.1.1.98 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pkinase_fungal | 0.52 | 42.0 | 2.75e-01 | 93.5% | 62.5% |
| 3932177 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.52 | 42.0 | 3.21e-01 | 90.3% | 85.3% |
| 3485727 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 44.0 | 3.85e-01 | 95.2% | 93.7% |
| 3476815 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.51 | 35.0 | 3.46e-01 | 74.2% | 71.4% |
| 3434453 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.51 | 32.0 | 3.64e-01 | 88.7% | 100.0% |
| 4250120 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 42.0 | 3.60e-01 | 100.0% | 65.2% |
| 4053789 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.51 | 38.0 | 2.66e-01 | 83.9% | 59.6% |
| 3600598 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.10e-01 | 98.4% | 38.6% |
| 3606532 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.50 | 35.0 | 3.19e-01 | 95.2% | 51.1% |