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IMGVR_UViG_3300024243_000319-3300024243-Ga0233436_10095365
Arc-VirIMGVR_UViG_3300024243_000319-3300024243-Ga0233436_10095365
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 44-133
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16677.12 best | GP3_package | 42.8 | 6.50e-11 | 100.0% | 83.2% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.84 | 76.0 | 6.56e-01 | 97.8% | 76.9% |
| 2hxiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 39.0 | 4.43e-01 | 72.2% | 81.2% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.63 | 48.0 | 4.20e-01 | 81.1% | 64.5% |
| 1z0xA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 37.0 | 4.16e-01 | 71.1% | 77.3% |
| 2iaiA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 55.0 | 4.84e-01 | 100.0% | 69.9% |
| 2uxuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 54.0 | 4.10e-01 | 98.9% | 55.6% |
| 3eu8A00 | 1.50.10.140 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Glycoside hydrolase 144 (GH144) | 0.59 | 51.0 | 3.39e-01 | 100.0% | 78.4% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 51.0 | 4.18e-01 | 100.0% | 51.4% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.58 | 42.0 | 3.24e-01 | 77.8% | 90.3% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 49.0 | 4.52e-01 | 98.9% | 76.2% |
| 4a4aA04 | 1.20.120.670 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase | 0.57 | 45.0 | 3.19e-01 | 86.7% | 50.3% |
| 3fhnA04 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.56 | 49.0 | 4.41e-01 | 100.0% | 84.7% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.56 | 44.0 | 4.58e-01 | 97.8% | 94.1% |
| 4o7iA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.55 | 42.0 | 3.43e-01 | 84.4% | 70.3% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.52 | 35.0 | 3.73e-01 | 77.8% | 80.8% |
| 4byfC01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.51 | 34.0 | 3.43e-01 | 85.6% | 67.4% |
| 2k9sA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 40.0 | 3.77e-01 | 83.3% | 77.6% |
| 2v57A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.61e-01 | 100.0% | 52.0% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.69e-01 | 77.8% | 81.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1247620 | 101.1.1.72 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GP3_package | 0.82 | 75.0 | 6.38e-01 | 97.8% | 74.1% |
| 5056814 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.63 | 56.0 | 3.84e-01 | 100.0% | 78.1% |
| 3208233 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.62 | 51.0 | 4.16e-01 | 90.0% | 56.5% |
| 4024319 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 48.0 | 3.31e-01 | 98.9% | 24.0% |
| 4978789 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.35e-01 | 95.6% | 74.7% |
| 3777935 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.58 | 42.0 | 2.99e-01 | 77.8% | 32.8% |
| 3682441 | 109.4.1.177 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 | 0.57 | 50.0 | 2.96e-01 | 98.9% | 17.6% |
| 4948369 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.57 | 42.0 | 3.73e-01 | 80.0% | 71.0% |
| 3990779 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 40.0 | 3.80e-01 | 87.8% | 60.9% |
| 3407400 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.56 | 46.0 | 3.64e-01 | 91.1% | 46.7% |
| 4068116 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.56 | 44.0 | 4.09e-01 | 85.6% | 88.7% |
| 3915673 | 109.4.1.2898 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1, PF26777, PF26778 | 0.56 | 48.0 | 2.78e-01 | 97.8% | 18.3% |
| 4252620 | 109.4.1.1134 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 | 0.55 | 48.0 | 3.38e-01 | 97.8% | 36.0% |
| 4025072 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 39.0 | 3.65e-01 | 74.4% | 95.7% |
| 3614292 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.54 | 40.0 | 3.36e-01 | 80.0% | 65.9% |
| 3804658 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.54 | 42.0 | 3.24e-01 | 85.6% | 64.5% |
| 3480324 | 3930.2.1.1 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in endoribonuclease Dicer › Helical bundle in endoribonuclease Dicer › Dicer_PBD | 0.54 | 43.0 | 3.76e-01 | 87.8% | 63.4% |
| 4943757 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 36.0 | 4.05e-01 | 80.0% | 93.8% |
| 3249058 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 39.0 | 3.06e-01 | 80.0% | 63.5% |
| 3487622 | 7558.1.1.11 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C | 0.52 | 39.0 | 2.56e-01 | 77.8% | 32.9% |
| 3283340 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.51 | 44.0 | 4.19e-01 | 100.0% | 84.5% |