←Back to structures

IMGVR_UViG_3300024256_001039-3300024256-Ga0233446_10068311

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300024256_001039-3300024256-Ga0233446_10068311 ↗
Kingdom:: archaea

Quality

92.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-168

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27257.1 best	HI_0787_N	123.1	9.20e-36	100.0%	74.8%

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gwiA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.67	58.0	3.77e-01	100.0%	61.2%
3fblA00	1.20.58.800	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	52.0	5.23e-01	89.0%	97.6%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.63	53.0	5.23e-01	96.3%	88.4%
2jjnA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.62	53.0	3.51e-01	100.0%	62.0%
3nz4B03	1.10.274.20	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3	0.60	51.0	4.74e-01	95.1%	86.5%
3unvA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.59	48.0	3.77e-01	93.9%	95.3%
2khmA01	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.58	40.0	3.76e-01	73.2%	66.7%
4h8aB01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.57	35.0	3.94e-01	85.4%	85.0%
3bkhA02	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.56	43.0	3.39e-01	85.4%	67.0%
1gk3A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.55	46.0	3.65e-01	98.8%	96.4%
2hekA01	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.55	47.0	3.27e-01	96.3%	54.8%
4n06A02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.54	41.0	3.00e-01	85.4%	47.3%
3ddlA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	44.0	3.18e-01	100.0%	72.6%
3x3bA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.51	43.0	3.12e-01	100.0%	70.8%
3da1A03	1.10.8.870	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain	0.50	39.0	3.42e-01	87.8%	52.9%
6h9dA00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.50	41.0	3.53e-01	96.3%	99.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3347927	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.57	45.0	3.21e-01	90.2%	70.5%
5030996	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	39.0	3.45e-01	78.0%	93.3%
4962478	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	37.0	2.78e-01	74.4%	72.0%
5039602	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.52	40.0	3.88e-01	82.9%	98.9%
4946095	633.2.1.0 ↗	alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein	0.51	42.0	3.87e-01	93.9%	90.9%
4945585	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	43.0	3.13e-01	97.6%	93.3%
4863860	5001.1.1.6 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin	0.50	44.0	3.16e-01	100.0%	72.0%

D2 medium residues 174-214

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qsaA03	1.10.530.10	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.64	51.0	3.53e-01	100.0%	34.1%
3osgA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.63	43.0	3.83e-01	70.7%	85.0%
6hxpA01	1.10.230.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2	0.62	42.0	3.20e-01	70.7%	85.9%
2e62A01	6.10.140.420	Special › Helix non-globular › Helix Hairpins ›	0.58	44.0	4.05e-01	82.9%	71.2%
3cq9A00	3.40.50.10240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain	0.57	40.0	2.59e-01	73.2%	31.7%
2pw6A00	3.40.830.10	Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like	0.54	43.0	2.75e-01	97.6%	52.0%
2mgwA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.53	42.0	4.01e-01	95.1%	75.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5001122	2004.1.1.194 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2	0.59	51.0	3.41e-01	100.0%	85.5%