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IMGVR_UViG_3300024261_002625-3300024261-Ga0233439_100171888

Arc-Vir

IMGVR_UViG_3300024261_002625-3300024261-Ga0233439_100171888

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-94
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 54.0 4.06e-01 88.0% 33.6%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 45.0 2.63e-01 90.0% 8.8%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.68 47.0 4.77e-01 82.0% 75.0%
4uozA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 50.0 4.67e-01 80.0% 98.4%
2cwaA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 3.86e-01 82.0% 36.7%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 49.0 3.85e-01 82.0% 38.2%
4nzjA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 53.0 4.38e-01 88.0% 92.0%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 3.82e-01 82.0% 42.3%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 53.0 3.71e-01 88.0% 64.7%
1vmeB01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.65 53.0 3.40e-01 92.0% 55.8%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 48.0 3.81e-01 82.0% 44.8%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.64 48.0 4.03e-01 80.0% 55.4%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.64 51.0 3.72e-01 88.0% 48.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.47e-01 82.0% 77.8%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.64 49.0 3.61e-01 86.0% 60.3%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 50.0 4.12e-01 88.0% 54.3%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 51.0 3.76e-01 94.0% 82.4%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 49.0 3.29e-01 88.0% 70.2%
7esdB01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 47.0 3.93e-01 84.0% 71.7%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.62 47.0 4.85e-01 86.0% 87.5%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.61 51.0 3.76e-01 98.0% 34.5%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 49.0 4.22e-01 90.0% 88.9%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 47.0 4.35e-01 84.0% 66.7%
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 48.0 4.05e-01 86.0% 51.2%
7zkpA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.60 46.0 3.12e-01 84.0% 86.4%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 3.59e-01 84.0% 44.5%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 48.0 3.77e-01 88.0% 44.1%
3rbyA01 2.40.128.320 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, N-terminal domain 0.60 47.0 3.44e-01 90.0% 32.0%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.59 47.0 3.56e-01 86.0% 99.1%
1q25A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.59 49.0 3.45e-01 92.0% 29.5%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.05e-01 88.0% 23.0%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.58 47.0 3.97e-01 88.0% 83.1%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 3.13e-01 84.0% 31.3%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.50e-01 86.0% 51.8%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 45.0 3.25e-01 92.0% 28.9%
3pu9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.58 45.0 2.91e-01 86.0% 35.3%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.58 44.0 3.58e-01 90.0% 44.6%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 45.0 2.75e-01 86.0% 17.3%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.57 46.0 4.01e-01 90.0% 94.8%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 3.67e-01 88.0% 67.0%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 44.0 3.10e-01 92.0% 40.5%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.56 45.0 3.89e-01 92.0% 91.6%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 47.0 3.14e-01 96.0% 63.6%
3rbsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.60e-01 86.0% 67.0%
4da5A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 39.0 3.41e-01 90.0% 48.2%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.54 42.0 3.94e-01 84.0% 72.1%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.45e-01 88.0% 57.1%
1k3eB02 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 42.0 3.33e-01 86.0% 63.8%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.54 38.0 3.33e-01 88.0% 46.5%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 43.0 3.00e-01 90.0% 37.9%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.54 42.0 3.51e-01 86.0% 100.0%
2g1dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 41.0 3.49e-01 96.0% 87.8%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 2.99e-01 88.0% 31.2%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.52 44.0 2.75e-01 94.0% 19.7%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.04e-01 86.0% 36.5%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 2.98e-01 92.0% 85.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3627111 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 46.0 2.67e-01 90.0% 7.0%
3225341 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.73 39.0 2.47e-01 84.0% 10.6%
3817727 295.1.1.44 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF29049 0.69 58.0 4.62e-01 92.0% 48.4%
3785652 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.67 52.0 3.68e-01 90.0% 26.9%
3301111 331.3.1.25 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.67 55.0 3.97e-01 96.0% 33.3%
2035523 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.66 50.0 3.84e-01 82.0% 42.0%
3994809 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.65 50.0 3.83e-01 84.0% 50.4%
3990413 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.64 48.0 4.42e-01 84.0% 62.9%
3734384 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.64 50.0 3.97e-01 88.0% 41.7%
3444245 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.64 50.0 4.39e-01 86.0% 60.0%
3691435 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.63 51.0 3.94e-01 88.0% 42.6%
3593399 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 53.0 4.11e-01 94.0% 90.0%
3387833 7503.1.1.7 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LpoB 0.63 50.0 3.43e-01 86.0% 75.6%
3797646 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 49.0 3.80e-01 86.0% 52.7%
3443030 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 43.0 3.79e-01 80.0% 46.3%
4021107 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.19e-01 90.0% 22.9%
3733532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.22e-01 84.0% 71.4%
222987 9.24.1.1 beta barrels › Lipocalins/Streptavidin › hypothetical protein BACOVA_00364 › hypothetical protein BACOVA_00364 › DUF4488 0.61 50.0 3.70e-01 98.0% 33.8%
3626130 10.32.1.33 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CIA30 0.61 46.0 3.06e-01 84.0% 75.7%
3405306 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.61 48.0 3.69e-01 88.0% 40.0%
6519 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.61 49.0 3.68e-01 90.0% 44.7%
3488069 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 47.0 2.79e-01 86.0% 26.4%
4930246 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 48.0 3.46e-01 88.0% 62.8%
3646244 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.60 53.0 2.95e-01 100.0% 16.5%
4998077 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 50.0 3.18e-01 100.0% 59.0%
3385013 109.21.1.4 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 0.60 48.0 2.79e-01 88.0% 89.1%
4028900 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 39.0 2.75e-01 90.0% 19.4%
154597 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 48.0 3.77e-01 88.0% 44.1%
3921679 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 3.41e-01 80.0% 44.5%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 46.0 2.95e-01 82.0% 18.8%
3784088 331.3.1.30 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3074 0.59 48.0 3.21e-01 96.0% 22.8%
3548841 2008.6.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.59 47.0 3.03e-01 96.0% 48.1%
3318895 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.59 46.0 3.79e-01 88.0% 52.6%
3390126 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 3.74e-01 86.0% 70.5%
3812094 5.1.4.223 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.58 41.0 2.46e-01 76.0% 99.7%
3256359 5.1.4.151 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BCAS3_WD40 0.58 42.0 2.48e-01 84.0% 17.5%
4939716 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.58 46.0 3.32e-01 88.0% 30.3%
3215667 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.58 42.0 3.25e-01 80.0% 40.0%
4466001 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 44.0 3.35e-01 92.0% 51.9%
4948087 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.23e-01 88.0% 90.0%
3673987 7579.1.1.44 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.55 36.0 2.26e-01 82.0% 10.6%
3536617 223.1.1.29 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.55 44.0 3.35e-01 92.0% 40.0%
4961931 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.55 41.0 2.93e-01 82.0% 28.6%
3704402 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 43.0 3.26e-01 86.0% 73.0%
3599937 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 42.0 3.32e-01 84.0% 48.0%
5039455 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.53 39.0 3.10e-01 86.0% 35.8%
3200774 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 41.0 2.40e-01 88.0% 9.6%
3685401 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.52 41.0 2.63e-01 96.0% 21.0%
5083720 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 39.0 3.38e-01 84.0% 51.2%
3959748 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 3.26e-01 94.0% 70.8%