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IMGVR_UViG_3300024344_003690-3300024344-Ga0209992_100146703

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300024344_003690-3300024344-Ga0209992_100146703 ↗
Kingdom:: archaea

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-53

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7zhhA02	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.62	45.0	4.05e-01	78.3%	60.6%
1vw4X00	2.20.28.120	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33	0.62	50.0	4.59e-01	100.0%	67.2%
2yvsA01	3.30.465.10	Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 ›	0.54	43.0	3.28e-01	100.0%	36.8%
1cc8A00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	44.0	3.85e-01	100.0%	90.3%
1yu0A01	2.10.10.30	Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) ›	0.51	32.0	3.15e-01	80.4%	52.9%
7u32F02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.51	43.0	4.19e-01	100.0%	92.2%
4l8nA03	3.30.160.670	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.50	35.0	2.62e-01	84.8%	88.4%
1z1bA01	3.30.160.60	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger	0.50	33.0	3.17e-01	89.1%	56.1%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5020208	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.61	50.0	4.93e-01	97.8%	88.0%
4969277	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.58	42.0	4.41e-01	100.0%	95.0%
None	—		0.54	48.0	2.88e-01	100.0%	19.1%
3946860	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.54	36.0	3.72e-01	89.1%	73.3%
4045843	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.53	43.0	3.90e-01	100.0%	100.0%
3934303	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.53	40.0	3.55e-01	93.5%	90.0%
3244935	376.1.1.27 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5	0.52	45.0	3.59e-01	100.0%	55.8%
3754508	376.1.1.29 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4	0.52	44.0	3.67e-01	100.0%	56.5%
3230227	376.1.1.21 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2	0.52	44.0	3.48e-01	100.0%	54.0%
3876355	376.1.1.29 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4	0.51	44.0	3.27e-01	100.0%	38.4%
2841823	4.1.1.114 ↗	beta barrels › SH3 › SH3 › SH3 › PSA_CBD	0.51	43.0	4.10e-01	100.0%	89.3%
3390232	384.1.1.0 ↗	few secondary structure elements › BPTI-like › BPTI-like › BPTI-like	0.51	33.0	3.29e-01	78.3%	60.0%
3668516	314.1.1.1 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2	0.51	36.0	2.22e-01	84.8%	89.0%
5083127	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	32.0	3.45e-01	84.8%	85.7%
3273705	284.1.1.9 ↗	a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N	0.50	41.0	3.81e-01	100.0%	90.8%
3556596	376.1.1.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4	0.50	42.0	3.49e-01	100.0%	53.3%