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IMGVR_UViG_3300024473_000131-3300024473-Ga0257086_1026517

Arc-Vir

IMGVR_UViG_3300024473_000131-3300024473-Ga0257086_1026517

Identity

Kingdom:
archaea

Quality

76.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-110
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25632.2 best Fusello_VP2_Capsid 47.9 2.00e-12 91.8% 74.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.78 58.0 4.77e-01 86.3% 45.2%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 51.0 5.20e-01 71.2% 84.1%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.73 56.0 4.79e-01 86.3% 51.7%
3x0uB01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.73 60.0 4.17e-01 90.4% 39.5%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 49.0 3.54e-01 72.6% 26.3%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 48.0 4.70e-01 86.3% 74.4%
2f6rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 46.0 3.34e-01 94.5% 26.1%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.61 48.0 3.58e-01 86.3% 84.0%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 48.0 4.44e-01 100.0% 67.0%
3qxlA00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.59 49.0 3.32e-01 87.7% 77.1%
3myvA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 49.0 3.47e-01 93.2% 93.7%
3kflA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.59 48.0 3.63e-01 89.0% 49.1%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 53.0 4.35e-01 100.0% 85.5%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.51 40.0 3.39e-01 93.2% 50.0%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972789 650.1.1.27 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Fusello_VP2_Capsid 0.93 74.0 7.85e-01 83.6% 100.0%
3782183 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.87 66.0 3.89e-01 79.5% 12.3%
3697701 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.83 67.0 4.17e-01 84.9% 20.9%
3914660 604.1.1.95 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › KIAA1755_C 0.81 60.0 5.67e-01 76.7% 65.9%
4967043 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.80 57.0 5.45e-01 75.3% 64.7%
3775375 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 66.0 5.15e-01 93.2% 68.0%
3679068 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.76 58.0 3.97e-01 82.2% 24.1%
4930709 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.76 55.0 4.03e-01 76.7% 28.7%
3525928 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.74 56.0 4.44e-01 80.8% 41.4%
4949471 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.69 49.0 3.75e-01 76.7% 39.4%
4575832 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.68 50.0 3.68e-01 94.5% 29.7%
3507910 3543.1.1.0 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel 0.67 56.0 4.18e-01 91.8% 69.7%
4668518 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.66 50.0 3.60e-01 95.9% 27.7%
3710371 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 50.0 3.79e-01 80.8% 46.3%
4605395 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.61 48.0 3.56e-01 94.5% 32.0%
4301843 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.61 44.0 3.34e-01 94.5% 29.7%
4358908 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.59 47.0 3.46e-01 95.9% 31.0%
3641442 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.54 46.0 4.07e-01 93.2% 69.5%
3616364 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.54 45.0 3.14e-01 91.8% 94.0%
4648749 101.1.2.274 ↗ alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.54 35.0 3.03e-01 74.0% 40.8%