←Back to structures
IMGVR_UViG_3300025001_000007-3300025001-Ga0209618_10002515
Arc-VirIMGVR_UViG_3300025001_000007-3300025001-Ga0209618_10002515
Identity
- Kingdom:
- archaea
Quality
91.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-42_121-143
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bz6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 55.0 | 4.82e-01 | 100.0% | 62.2% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 44.0 | 4.26e-01 | 100.0% | 78.4% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.54 | 39.0 | 3.33e-01 | 80.6% | 97.4% |
D2
high
residues 46-117
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 52.0 | 4.75e-01 | 84.7% | 72.9% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 52.0 | 4.96e-01 | 84.7% | 94.0% |
| 1b4cA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 49.0 | 4.53e-01 | 80.6% | 78.3% |
| 4kjmB01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.65 | 48.0 | 5.12e-01 | 79.2% | 100.0% |
| 6kmjA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.65 | 54.0 | 4.73e-01 | 94.4% | 98.2% |
| 1xvhB00 | 1.20.120.1850 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) | 0.65 | 49.0 | 4.17e-01 | 80.6% | 54.2% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.62 | 53.0 | 4.75e-01 | 97.2% | 96.2% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.62 | 48.0 | 4.28e-01 | 86.1% | 81.9% |
| 1s1eA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 47.0 | 3.59e-01 | 86.1% | 47.0% |
| 5ko4A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 50.0 | 4.62e-01 | 97.2% | 100.0% |
| 3mqmA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 52.0 | 4.37e-01 | 97.2% | 77.8% |
| 3rpmA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.60 | 45.0 | 4.26e-01 | 79.2% | 75.3% |
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 49.0 | 4.53e-01 | 94.4% | 87.4% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.59 | 45.0 | 4.15e-01 | 86.1% | 73.5% |
| 1mpgA02 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.58 | 47.0 | 4.07e-01 | 93.1% | 100.0% |
| 2xtzA02 | 1.10.400.10 | Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like | 0.57 | 49.0 | 4.17e-01 | 100.0% | 88.9% |
| 5pg1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 47.0 | 4.17e-01 | 97.2% | 80.0% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 45.0 | 3.45e-01 | 94.4% | 70.0% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 44.0 | 3.82e-01 | 90.3% | 64.5% |
| 6uf3A00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.55 | 41.0 | 2.93e-01 | 83.3% | 77.6% |
| 3cs1A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 41.0 | 3.97e-01 | 81.9% | 74.7% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.54 | 38.0 | 3.99e-01 | 75.0% | 81.5% |
| 1cipA02 | 1.10.400.10 | Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like | 0.54 | 45.0 | 3.96e-01 | 100.0% | 93.3% |
| 1vdhA01 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.53 | 44.0 | 3.84e-01 | 98.6% | 81.8% |
| 1bk4A02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.52 | 37.0 | 3.08e-01 | 76.4% | 96.3% |
| 6z74C02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.51 | 40.0 | 3.26e-01 | 90.3% | 93.7% |
| 2bpoA02 | 1.20.990.10 | Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 | 0.51 | 41.0 | 3.49e-01 | 100.0% | 51.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3600794 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.70 | 60.0 | 5.42e-01 | 91.7% | 78.9% |
| 3239915 | 181.2.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain | 0.68 | 49.0 | 5.15e-01 | 76.4% | 84.6% |
| 3617591 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.66 | 52.0 | 4.44e-01 | 86.1% | 66.7% |
| 3298540 | 109.49.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central | 0.63 | 55.0 | 3.81e-01 | 98.6% | 36.8% |
| 1701031 | 633.27.1.1 ↗ | alpha bundles › Bromodomain-like › Four-helical bundle in acetyl-CoA carboxylase › Four-helical bundle in acetyl-CoA carboxylase › ACC_central | 0.63 | 53.0 | 5.14e-01 | 97.2% | 98.8% |
| 4135417 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 50.0 | 3.75e-01 | 100.0% | 83.9% |
| 3270996 | 3289.1.1.2 ↗ | alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nckap1 | 0.59 | 49.0 | 2.76e-01 | 100.0% | 14.2% |
| 5003589 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.56 | 39.0 | 3.80e-01 | 75.0% | 77.6% |
| 3399403 | 206.1.1.88 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 | 0.55 | 44.0 | 2.75e-01 | 88.9% | 51.2% |
| 3303852 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 40.0 | 3.87e-01 | 80.6% | 72.9% |
| 3288521 | 2004.1.1.189 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 | 0.53 | 42.0 | 3.16e-01 | 90.3% | 62.0% |
| 3796308 | 109.4.1.372 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECSIT_N | 0.51 | 36.0 | 2.78e-01 | 76.4% | 30.0% |
| 3399181 | 108.1.1.99 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7 | 0.51 | 42.0 | 3.77e-01 | 97.2% | 82.7% |