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IMGVR_UViG_3300025002_000043-3300025002-Ga0209001_100041418
Arc-VirIMGVR_UViG_3300025002_000043-3300025002-Ga0209001_100041418
Identity
- Kingdom:
- archaea
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-98
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xfjB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.76 | 46.0 | 3.76e-01 | 96.8% | 33.5% |
| 1ydwA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 40.0 | 3.64e-01 | 97.9% | 43.0% |
| 6jebA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 61.0 | 4.03e-01 | 100.0% | 41.3% |
| 3vpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 43.0 | 3.78e-01 | 97.9% | 43.3% |
| 3cnyA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.66 | 61.0 | 4.19e-01 | 100.0% | 35.8% |
| 2fp4A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.66 | 40.0 | 3.71e-01 | 96.8% | 46.3% |
| 2p9bA02 | 3.30.110.90 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Amidohydrolase | 0.65 | 42.0 | 4.37e-01 | 96.8% | 70.9% |
| 7pd2B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 57.0 | 3.81e-01 | 100.0% | 25.5% |
| 3eyxA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.63 | 55.0 | 4.38e-01 | 97.9% | 82.2% |
| 1t35E00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 45.0 | 3.62e-01 | 100.0% | 38.3% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 46.0 | 4.15e-01 | 97.9% | 54.9% |
| 2g0tB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 41.0 | 3.60e-01 | 100.0% | 43.2% |
| 6ln3A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 54.0 | 4.23e-01 | 96.8% | 87.1% |
| 2p9bA03 | 3.40.50.10910 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase | 0.61 | 50.0 | 4.62e-01 | 98.9% | 68.5% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 49.0 | 3.56e-01 | 100.0% | 33.2% |
| 3f2bA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.59 | 51.0 | 3.66e-01 | 100.0% | 34.7% |
| 5swcD00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.59 | 52.0 | 4.07e-01 | 100.0% | 81.6% |
| 2aaaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 52.0 | 3.49e-01 | 100.0% | 49.2% |
| 5d8nA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.58 | 53.0 | 4.17e-01 | 100.0% | 82.4% |
| 2ggsA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 53.0 | 4.07e-01 | 100.0% | 66.3% |
| 3wsfB01 | 3.40.1390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › NIF3 (NGG1p interacting factor 3)-like | 0.58 | 36.0 | 3.32e-01 | 96.8% | 48.0% |
| 6j4nC01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 44.0 | 2.98e-01 | 100.0% | 22.3% |
| 2plqA00 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.58 | 51.0 | 3.50e-01 | 100.0% | 34.7% |
| 3mfqA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 49.0 | 4.33e-01 | 100.0% | 64.4% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.57 | 48.0 | 4.34e-01 | 96.8% | 65.9% |
| 6y04A01 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.57 | 51.0 | 4.16e-01 | 100.0% | 84.2% |
| 5b7yA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.57 | 51.0 | 3.69e-01 | 100.0% | 38.3% |
| 1toaA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 47.0 | 4.19e-01 | 97.9% | 64.1% |
| 4rg1A01 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.56 | 51.0 | 3.94e-01 | 97.9% | 46.7% |
| 5tcdA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.56 | 50.0 | 3.57e-01 | 98.9% | 85.2% |
| 3htvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 49.0 | 4.02e-01 | 96.8% | 76.2% |
| 3bwwA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.55 | 49.0 | 3.61e-01 | 100.0% | 38.7% |
| 5w56B02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 42.0 | 3.83e-01 | 96.8% | 60.9% |
| 3cinA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.48e-01 | 100.0% | 89.2% |
| 4yo7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 48.0 | 4.25e-01 | 100.0% | 68.5% |
| 2fp3A01 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 49.0 | 3.67e-01 | 100.0% | 61.2% |
| 1xf1A01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.54 | 49.0 | 3.33e-01 | 100.0% | 57.7% |
| 3hh8A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 41.0 | 3.72e-01 | 96.8% | 59.5% |
| 4iilA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 47.0 | 3.81e-01 | 100.0% | 51.4% |
| 4kq9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 47.0 | 4.63e-01 | 100.0% | 90.8% |
| 3zy2A02 | 3.40.50.11350 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 48.0 | 3.95e-01 | 98.9% | 60.8% |
| 2fepA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 45.0 | 4.03e-01 | 100.0% | 65.4% |
| 3ujpA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 46.0 | 4.27e-01 | 98.9% | 76.5% |
| 2nxfA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 47.0 | 3.27e-01 | 100.0% | 46.4% |
| 3d02A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 3.87e-01 | 100.0% | 61.2% |
| 5hsgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 44.0 | 4.04e-01 | 100.0% | 71.2% |
| 4ycsA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 47.0 | 4.25e-01 | 100.0% | 82.9% |
| 3ihkA00 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.50 | 32.0 | 2.58e-01 | 100.0% | 29.5% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984011 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 78.0 | 5.35e-01 | 93.6% | 33.4% |
| 4972118 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 82.0 | 5.33e-01 | 100.0% | 47.8% |
| 5077809 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.88 | 78.0 | 5.70e-01 | 94.7% | 42.6% |
| 4991598 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 77.0 | 5.37e-01 | 98.9% | 32.8% |
| 5071291 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 77.0 | 5.34e-01 | 93.6% | 34.3% |
| 5071219 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.87 | 78.0 | 5.32e-01 | 94.7% | 32.9% |
| 5065371 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 81.0 | 5.22e-01 | 100.0% | 30.5% |
| 3289806 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 75.0 | 5.05e-01 | 92.6% | 30.5% |
| 4927825 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 77.0 | 5.26e-01 | 94.7% | 35.9% |
| 5032582 | 2002.1.2.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › Hypothetical protein Cthe_0052 | 0.86 | 81.0 | 6.43e-01 | 100.0% | 60.7% |
| 4968427 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 76.0 | 5.27e-01 | 94.7% | 37.9% |
| 4972341 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.86 | 81.0 | 5.53e-01 | 100.0% | 36.8% |
| 4955479 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 75.0 | 5.17e-01 | 93.6% | 34.8% |
| 5027493 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.84 | 74.0 | 5.10e-01 | 94.7% | 32.7% |
| 5075213 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.84 | 79.0 | 5.17e-01 | 100.0% | 31.4% |
| 5077806 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.84 | 79.0 | 5.10e-01 | 100.0% | 51.4% |
| 5036891 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.84 | 76.0 | 5.34e-01 | 96.8% | 34.5% |
| 5083425 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 74.0 | 5.22e-01 | 95.7% | 35.2% |
| 4995218 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 72.0 | 5.09e-01 | 95.7% | 33.5% |
| 5035238 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 70.0 | 5.03e-01 | 91.5% | 34.5% |
| 5058697 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 64.0 | 4.30e-01 | 100.0% | 23.6% |
| 2048184 | 2002.1.1.188 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_106 | 0.79 | 63.0 | 6.11e-01 | 97.9% | 75.2% |
| 5023379 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.74 | 50.0 | 3.79e-01 | 96.8% | 31.0% |
| 4988271 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.70 | 60.0 | 5.20e-01 | 93.6% | 60.7% |
| 4992332 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.69 | 60.0 | 3.96e-01 | 100.0% | 23.7% |
| 4997554 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.67 | 60.0 | 5.08e-01 | 96.8% | 96.0% |
| 5055179 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.67 | 60.0 | 4.55e-01 | 96.8% | 68.6% |
| 5014519 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.66 | 56.0 | 4.75e-01 | 96.8% | 56.7% |
| 4988576 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.65 | 58.0 | 4.90e-01 | 96.8% | 60.0% |
| 3425067 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.64 | 58.0 | 4.11e-01 | 100.0% | 42.1% |
| 5064569 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.64 | 58.0 | 4.63e-01 | 96.8% | 85.1% |
| 5049899 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.64 | 52.0 | 3.96e-01 | 100.0% | 38.1% |
| 4959883 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.63 | 55.0 | 4.70e-01 | 96.8% | 59.5% |
| 4934575 | 2004.1.1.191 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 | 0.63 | 55.0 | 4.38e-01 | 98.9% | 84.5% |
| 3973306 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.63 | 48.0 | 4.55e-01 | 96.8% | 68.2% |
| 1875639 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.63 | 41.0 | 3.32e-01 | 97.9% | 32.0% |
| 4172297 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 57.0 | 4.59e-01 | 97.9% | 71.1% |
| 5009891 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.61 | 39.0 | 3.13e-01 | 98.9% | 31.9% |
| 4963947 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.61 | 54.0 | 4.54e-01 | 96.8% | 59.3% |
| 5055638 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.61 | 53.0 | 4.14e-01 | 97.9% | 60.5% |
| 4132363 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 52.0 | 4.02e-01 | 96.8% | 80.5% |
| 3278371 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.60 | 51.0 | 4.34e-01 | 96.8% | 56.1% |
| 4314110 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 52.0 | 3.96e-01 | 96.8% | 83.0% |
| 3937265 | 7590.1.1.6 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid | 0.60 | 55.0 | 4.43e-01 | 97.9% | 59.4% |
| 4964532 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.60 | 49.0 | 4.26e-01 | 96.8% | 58.3% |
| 5001505 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.59 | 53.0 | 3.85e-01 | 100.0% | 60.7% |
| 5053470 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.59 | 53.0 | 3.64e-01 | 98.9% | 52.7% |
| 3609278 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.59 | 52.0 | 3.63e-01 | 100.0% | 35.2% |
| 4977476 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.58 | 52.0 | 3.72e-01 | 98.9% | 60.7% |
| 3689440 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.58 | 50.0 | 4.50e-01 | 96.8% | 99.3% |
| 3256146 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.57 | 50.0 | 3.76e-01 | 98.9% | 73.9% |
| 2877581 | 2484.1.1.95 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like | 0.57 | 49.0 | 3.54e-01 | 96.8% | 33.8% |
| 4116094 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.57 | 52.0 | 4.84e-01 | 98.9% | 84.3% |
| 3288652 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.57 | 49.0 | 4.11e-01 | 96.8% | 62.4% |
| 3958238 | 7531.1.1.0 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like | 0.56 | 51.0 | 3.69e-01 | 100.0% | 55.0% |
| 5065263 | 2007.3.1.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 | 0.56 | 51.0 | 4.12e-01 | 100.0% | 79.4% |
| 2048148 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.56 | 46.0 | 4.12e-01 | 96.8% | 62.7% |
| 5050866 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 51.0 | 3.77e-01 | 100.0% | 43.0% |
| 3405128 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.55 | 50.0 | 4.07e-01 | 97.9% | 58.2% |
| 3937352 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 49.0 | 4.57e-01 | 100.0% | 100.0% |
| 4939438 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 48.0 | 4.20e-01 | 97.9% | 71.4% |
| 3229980 | 2007.1.9.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) | 0.53 | 43.0 | 3.71e-01 | 95.7% | 54.8% |
| 2049957 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.52 | 44.0 | 4.04e-01 | 98.9% | 70.7% |
| 3937962 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.52 | 43.0 | 3.61e-01 | 95.7% | 53.1% |
| 3954412 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.51 | 46.0 | 4.17e-01 | 100.0% | 78.5% |
| 3237572 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 45.0 | 3.81e-01 | 97.9% | 74.8% |
| 3482477 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.50 | 44.0 | 3.78e-01 | 96.8% | 82.0% |
| 3948561 | 2007.1.2.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_1 | 0.50 | 46.0 | 4.09e-01 | 100.0% | 88.7% |
D2
high
residues 122-188
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 5.01e-01 | 100.0% | 71.2% |
| 2bv6A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 4.29e-01 | 100.0% | 43.4% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 50.0 | 5.13e-01 | 100.0% | 85.7% |
| 2grvA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 43.0 | 3.18e-01 | 100.0% | 25.9% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 4.23e-01 | 100.0% | 46.5% |
| 7ahbB01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.64 | 36.0 | 3.86e-01 | 83.6% | 62.7% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 5.16e-01 | 100.0% | 88.6% |
| 3lmmC04 | 1.10.10.2340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 50.0 | 4.65e-01 | 100.0% | 67.8% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 50.0 | 4.45e-01 | 100.0% | 60.0% |
| 2fyiC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 40.0 | 3.31e-01 | 100.0% | 34.6% |
| 8gq6C01 | 3.30.230.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 | 0.62 | 51.0 | 3.96e-01 | 100.0% | 40.3% |
| 1p4xA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.01e-01 | 100.0% | 48.0% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 4.55e-01 | 100.0% | 67.0% |
| 2jfdA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.61 | 34.0 | 3.48e-01 | 88.1% | 56.1% |
| 7agpA01 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.59 | 35.0 | 3.66e-01 | 83.6% | 63.9% |
| 1kj6A00 | 3.10.360.10 | Alpha Beta › Roll › Antimicrobial Peptide, Beta-defensin 2; Chain A › Antimicrobial Peptide, Beta-defensin 2; Chain A | 0.59 | 30.0 | 3.50e-01 | 85.1% | 66.7% |
| 3frhA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 42.0 | 3.09e-01 | 100.0% | 27.9% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 49.0 | 4.12e-01 | 100.0% | 73.2% |
| 4f52C02 | 3.30.230.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 | 0.59 | 49.0 | 3.84e-01 | 100.0% | 41.5% |
| 4la9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 38.0 | 3.14e-01 | 100.0% | 34.6% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.34e-01 | 100.0% | 75.6% |
| 2pvuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 37.0 | 3.13e-01 | 100.0% | 36.6% |
| 1xb4B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 4.50e-01 | 100.0% | 88.0% |
| 1avaA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 37.0 | 3.87e-01 | 100.0% | 82.8% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955755 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 52.0 | 5.42e-01 | 100.0% | 81.7% |
| 4359314 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 54.0 | 5.70e-01 | 100.0% | 91.7% |
| 5010793 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.70 | 56.0 | 5.41e-01 | 100.0% | 78.7% |
| 5079721 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 51.0 | 5.43e-01 | 100.0% | 96.4% |
| 4346943 | 383.1.1.9 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta_2 | 0.69 | 32.0 | 4.09e-01 | 85.1% | 80.0% |
| 3338320 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.69 | 46.0 | 4.96e-01 | 100.0% | 85.5% |
| 4316250 | 6102.1.1.1 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA | 0.68 | 55.0 | 3.90e-01 | 100.0% | 27.7% |
| 4322962 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.68 | 55.0 | 5.49e-01 | 100.0% | 87.1% |
| 5049144 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 53.0 | 3.66e-01 | 100.0% | 23.8% |
| 5054059 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 5.08e-01 | 100.0% | 90.9% |
| 4388536 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.68 | 53.0 | 5.44e-01 | 100.0% | 92.3% |
| 4650006 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.68 | 53.0 | 5.32e-01 | 100.0% | 85.7% |
| 4072084 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 53.0 | 4.72e-01 | 100.0% | 59.0% |
| 5003975 | 101.1.2.944 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26486 | 0.67 | 52.0 | 5.32e-01 | 100.0% | 89.2% |
| 5005254 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 52.0 | 5.12e-01 | 100.0% | 78.7% |
| 5050882 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 5.14e-01 | 100.0% | 84.6% |
| 4186742 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.67 | 54.0 | 5.41e-01 | 100.0% | 88.6% |
| 4947165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 53.0 | 4.00e-01 | 100.0% | 35.3% |
| 4286088 | 383.1.1.9 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta_2 | 0.66 | 32.0 | 4.01e-01 | 85.1% | 82.9% |
| 4294306 | 383.1.1.3 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta | 0.66 | 33.0 | 4.10e-01 | 89.6% | 80.0% |
| 3568764 | 383.1.1.9 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta_2 | 0.66 | 32.0 | 3.98e-01 | 85.1% | 82.9% |
| 3890261 | 101.1.2.65 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 | 0.65 | 52.0 | 5.24e-01 | 100.0% | 88.4% |
| 4158600 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.65 | 51.0 | 4.07e-01 | 100.0% | 41.4% |
| 3184966 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.65 | 37.0 | 2.36e-01 | 88.1% | 11.0% |
| 4997021 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.64 | 47.0 | 4.17e-01 | 100.0% | 53.0% |
| 4927083 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 54.0 | 4.87e-01 | 100.0% | 68.1% |
| 4224284 | 101.1.2.498 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25870 | 0.63 | 45.0 | 3.99e-01 | 100.0% | 51.0% |
| 3786852 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.63 | 54.0 | 5.06e-01 | 100.0% | 81.2% |
| 3281670 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.63 | 53.0 | 4.05e-01 | 100.0% | 38.8% |
| 4988619 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.63 | 50.0 | 5.00e-01 | 100.0% | 87.1% |
| 3588406 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 51.0 | 5.25e-01 | 100.0% | 100.0% |
| 3808247 | 101.1.2.164 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 | 0.62 | 45.0 | 4.57e-01 | 100.0% | 83.1% |
| 3852603 | 383.1.1.10 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_big | 0.61 | 33.0 | 3.46e-01 | 95.5% | 57.6% |
| 4122469 | 383.1.1.9 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Defensin-related › Defensin_beta_2 | 0.61 | 33.0 | 4.01e-01 | 97.0% | 87.5% |
| 4962159 | 7523.1.1.3 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 | 0.60 | 40.0 | 3.10e-01 | 100.0% | 28.5% |
| 4025377 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 51.0 | 4.83e-01 | 100.0% | 87.1% |
| 5063200 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 4.56e-01 | 100.0% | 72.9% |
| 4937694 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.59 | 43.0 | 3.82e-01 | 100.0% | 54.1% |
| 3933118 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 4.26e-01 | 100.0% | 72.2% |
| 4934550 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 49.0 | 3.46e-01 | 100.0% | 76.2% |
| 3627237 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.57 | 35.0 | 3.66e-01 | 88.1% | 66.7% |
| 5050901 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 49.0 | 4.23e-01 | 100.0% | 71.8% |
| 3490352 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 4.33e-01 | 100.0% | 81.2% |
| 3670264 | 304.137.1.4 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain › Methyltr_RsmB-F | 0.54 | 47.0 | 2.97e-01 | 100.0% | 28.0% |
| 3170060 | 2007.1.16.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 | 0.53 | 42.0 | 3.31e-01 | 100.0% | 40.0% |
| 5074755 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.50 | 39.0 | 2.81e-01 | 91.0% | 28.5% |