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IMGVR_UViG_3300025002_000077-3300025002-Ga0209001_10005306
Arc-VirIMGVR_UViG_3300025002_000077-3300025002-Ga0209001_10005306
Identity
- Kingdom:
- archaea
Quality
75.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 190-367_383-391
Domain cluster:
rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02518.32 best | HATPase_c | 26.7 | 9.10e-06 | 75.4% | 87.4% |
| PF13589.13 | HATPase_c_3 | 30.9 | 3.60e-07 | 68.5% | 68.6% |
D2
high
residues 405-500
Domain cluster:
rep: IMGVR_UViG_3300035037_000444-3300035037-Ga0376511_006805_2915_4249__D131-208
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.65 | 58.0 | 5.05e-01 | 100.0% | 79.9% |
| 5dnlA01 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.63 | 45.0 | 5.01e-01 | 100.0% | 96.0% |
| 3cwvA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.62 | 54.0 | 4.73e-01 | 100.0% | 83.4% |
| 1pieA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.60 | 53.0 | 4.10e-01 | 96.9% | 61.1% |
| 1b63A02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.60 | 52.0 | 4.93e-01 | 96.9% | 91.2% |
| 3u1kC01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.59 | 52.0 | 4.04e-01 | 100.0% | 89.4% |
| 4hacB01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 51.0 | 4.20e-01 | 96.9% | 62.6% |
| 1nz0D00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.59 | 50.0 | 4.84e-01 | 97.9% | 82.9% |
| 4p52A01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 51.0 | 4.21e-01 | 99.0% | 62.8% |
| 1l5xA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.57 | 51.0 | 3.70e-01 | 100.0% | 66.9% |
| 6q3wD01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 48.0 | 3.89e-01 | 96.9% | 64.2% |
| 1sp8C02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 36.0 | 2.86e-01 | 100.0% | 32.2% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 32.0 | 3.34e-01 | 93.8% | 65.2% |
| 1rybA00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 38.0 | 3.11e-01 | 81.2% | 91.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3204895 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.67 | 60.0 | 5.33e-01 | 100.0% | 87.9% |
| 3310887 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.67 | 60.0 | 5.49e-01 | 100.0% | 79.2% |
| 5046932 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.66 | 58.0 | 5.39e-01 | 100.0% | 87.2% |
| 3632917 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.66 | 59.0 | 5.51e-01 | 99.0% | 95.0% |
| 3596618 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.66 | 60.0 | 4.84e-01 | 100.0% | 98.3% |
| 4860816 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.65 | 58.0 | 5.22e-01 | 99.0% | 88.1% |
| 3470861 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.65 | 56.0 | 4.99e-01 | 96.9% | 87.1% |
| 4940508 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.64 | 57.0 | 5.35e-01 | 100.0% | 85.0% |
| 3596948 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.64 | 58.0 | 5.09e-01 | 100.0% | 79.3% |
| 4354451 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.64 | 56.0 | 5.15e-01 | 96.9% | 82.4% |
| 3929187 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.64 | 57.0 | 4.99e-01 | 100.0% | 89.7% |
| 4012676 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.62 | 54.0 | 5.15e-01 | 100.0% | 91.3% |
| 4490100 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.62 | 53.0 | 4.93e-01 | 96.9% | 86.4% |
| 4018662 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.61 | 54.0 | 4.62e-01 | 100.0% | 86.9% |
| 4036592 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.60 | 52.0 | 5.19e-01 | 96.9% | 94.0% |
| 3739011 | 212.1.1.9 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair | 0.60 | 52.0 | 5.03e-01 | 97.9% | 94.5% |
| None | — | 0.60 | 53.0 | 4.32e-01 | 100.0% | 78.9% | |
| 4224824 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.58 | 51.0 | 3.59e-01 | 100.0% | 95.9% |
| 4573277 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.57 | 50.0 | 3.63e-01 | 100.0% | 96.0% |
| 3646627 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.57 | 50.0 | 3.39e-01 | 96.9% | 31.0% |
| 4616999 | 212.1.1.8 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P | 0.56 | 49.0 | 4.59e-01 | 97.9% | 79.2% |
| 4239515 | 212.1.1.8 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P | 0.56 | 49.0 | 4.70e-01 | 96.9% | 86.4% |
| 4234903 | 212.1.1.8 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P | 0.56 | 47.0 | 4.50e-01 | 94.8% | 80.9% |
| 4039115 | 212.1.1.8 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P | 0.56 | 46.0 | 4.49e-01 | 99.0% | 80.9% |
| 5052436 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.56 | 35.0 | 3.77e-01 | 93.8% | 75.0% |
| 5074343 | 319.1.1.23 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 | 0.55 | 33.0 | 3.64e-01 | 92.7% | 76.0% |
| 3822784 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 44.0 | 4.49e-01 | 91.7% | 88.4% |
| 4152189 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.54 | 47.0 | 4.02e-01 | 99.0% | 66.1% |
| 4946267 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.53 | 33.0 | 3.38e-01 | 93.8% | 64.4% |
| 4974098 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 33.0 | 3.42e-01 | 93.8% | 65.6% |
| 3724677 | 7579.1.1.99 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4, Abhydrolase_6 | 0.52 | 46.0 | 3.22e-01 | 100.0% | 31.9% |
| 4306159 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.51 | 39.0 | 3.10e-01 | 81.2% | 89.5% |
| 3931051 | 7516.1.1.86 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_49 | 0.51 | 45.0 | 3.04e-01 | 99.0% | 52.4% |
| 3933896 | 7516.1.1.86 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_49 | 0.51 | 45.0 | 3.04e-01 | 99.0% | 52.4% |
| 4953487 | 231.1.2.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ | 0.50 | 44.0 | 3.53e-01 | 100.0% | 63.0% |
| 5010537 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.50 | 34.0 | 3.64e-01 | 97.9% | 84.8% |
D3
medium
residues 503-551_573-612
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ucxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 38.0 | 2.76e-01 | 75.3% | 41.5% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.51 | 41.0 | 2.70e-01 | 93.3% | 55.9% |
D4
medium
residues 552-572_613-710
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 40.0 | 4.74e-01 | 79.0% | 98.7% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.62 | 38.0 | 4.18e-01 | 73.9% | 74.7% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 44.0 | 4.86e-01 | 78.2% | 95.7% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 40.0 | 3.88e-01 | 82.4% | 59.8% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.58 | 34.0 | 3.71e-01 | 72.3% | 71.3% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.57 | 27.0 | 3.10e-01 | 74.8% | 58.8% |
| 3nv9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 40.0 | 3.01e-01 | 76.5% | 32.0% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.53 | 45.0 | 4.09e-01 | 95.0% | 89.0% |
| 3sqnA02 | 1.10.1790.40 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.52 | 32.0 | 3.28e-01 | 80.7% | 60.2% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.51 | 29.0 | 3.15e-01 | 91.6% | 63.4% |
| 1hbgA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 36.0 | 3.36e-01 | 71.4% | 95.9% |
| 3lomA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.51 | 45.0 | 3.44e-01 | 99.2% | 95.5% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.51 | 42.0 | 3.86e-01 | 89.9% | 98.1% |
| 3eyyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 28.0 | 3.31e-01 | 74.8% | 79.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608709 | 101.1.10.15 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_1 | 0.63 | 39.0 | 3.94e-01 | 77.3% | 60.8% |
| 5042372 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.60 | 36.0 | 3.86e-01 | 91.6% | 68.3% |
| 4182059 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.59 | 31.0 | 3.30e-01 | 95.8% | 55.5% |
| 3164494 | 604.39.1.1 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM | 0.58 | 51.0 | 4.28e-01 | 98.3% | 78.5% |
| 3989376 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.57 | 36.0 | 3.84e-01 | 75.6% | 71.4% |
| 5034157 | 1015.1.1.2 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth | 0.55 | 45.0 | 3.83e-01 | 89.9% | 64.4% |
| 3628698 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 28.0 | 2.85e-01 | 91.6% | 47.8% |
| 3932277 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 42.0 | 3.32e-01 | 82.4% | 97.6% |
| 3536006 | 7060.1.1.1 ↗ | alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 | 0.52 | 37.0 | 2.97e-01 | 71.4% | 51.9% |
| 3278400 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.52 | 40.0 | 3.81e-01 | 84.9% | 69.3% |
| 5067572 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.52 | 29.0 | 3.06e-01 | 93.3% | 61.0% |