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IMGVR_UViG_3300025003_000008-3300025003-Ga0210052_100002793

Arc-Vir

IMGVR_UViG_3300025003_000008-3300025003-Ga0210052_100002793

Quality

71.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-78
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 55.0 5.80e-01 92.5% 89.4%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 58.0 5.43e-01 98.1% 70.6%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.73 62.0 4.95e-01 96.2% 50.9%
2dn0A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 57.0 5.15e-01 96.2% 63.2%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 62.0 5.83e-01 100.0% 80.3%
2cqqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 59.0 5.45e-01 100.0% 71.6%
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.71 56.0 4.58e-01 86.8% 97.0%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.70 58.0 4.87e-01 92.5% 68.5%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.75e-01 96.2% 97.9%
1qviA01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.69 57.0 4.44e-01 92.5% 60.0%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 55.0 5.07e-01 96.2% 67.6%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 61.0 4.67e-01 100.0% 76.7%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 58.0 5.64e-01 96.2% 85.0%
1br2A03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.68 56.0 4.67e-01 92.5% 57.9%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 48.0 5.01e-01 98.1% 83.3%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 60.0 4.46e-01 100.0% 75.2%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 58.0 5.40e-01 96.2% 95.5%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.53e-01 100.0% 61.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 51.0 5.02e-01 98.1% 80.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 58.0 5.08e-01 98.1% 92.4%
2ys9A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 4.77e-01 96.2% 65.7%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 5.04e-01 100.0% 84.6%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 48.0 4.50e-01 98.1% 62.1%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.60e-01 100.0% 62.5%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 54.0 4.78e-01 98.1% 62.2%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.34e-01 100.0% 58.3%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.59e-01 100.0% 67.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 47.0 4.55e-01 90.6% 68.9%
1cxsA02 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.64 56.0 3.63e-01 100.0% 65.9%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 49.0 3.12e-01 90.6% 33.1%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.62 51.0 3.68e-01 92.5% 38.7%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 49.0 4.90e-01 96.2% 90.7%
1neqA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 48.0 4.32e-01 86.8% 77.0%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.61 43.0 4.70e-01 86.8% 97.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.30e-01 100.0% 63.0%
2x26A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 50.0 3.51e-01 96.2% 75.7%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.39e-01 86.8% 100.0%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.60 46.0 4.44e-01 84.9% 74.6%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.60 50.0 4.11e-01 100.0% 84.5%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.59 51.0 3.79e-01 100.0% 84.4%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 46.0 4.34e-01 88.7% 92.5%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.31e-01 100.0% 59.6%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 51.0 4.40e-01 100.0% 84.5%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 45.0 3.94e-01 88.7% 63.5%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 46.0 4.41e-01 100.0% 88.2%
6el2B01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 43.0 4.45e-01 88.7% 89.8%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 38.0 3.88e-01 83.0% 74.1%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.55 46.0 3.31e-01 100.0% 43.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.29e-01 100.0% 62.4%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.35e-01 100.0% 49.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947484 2005.1.1.12 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e 0.77 54.0 3.41e-01 73.6% 28.2%
3886164 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.77 60.0 6.24e-01 98.1% 90.0%
3466087 101.1.1.253 alpha arrays › HTH › HTH › Three-helical HTH › HTH_CLF_N 0.76 59.0 6.08e-01 98.1% 90.0%
3854655 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 61.0 6.25e-01 96.2% 94.0%
3823877 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 59.0 5.64e-01 98.1% 75.0%
3217696 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 61.0 5.69e-01 96.2% 73.8%
3536325 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 65.0 6.43e-01 98.1% 94.5%
3994528 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 60.0 5.83e-01 98.1% 80.0%
3216569 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.74 60.0 5.99e-01 98.1% 87.3%
5002775 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.73 51.0 5.68e-01 96.2% 97.5%
4984064 101.1.1.61 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AsnC-type 0.73 54.0 5.36e-01 100.0% 76.4%
3240028 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.72 57.0 5.68e-01 96.2% 85.5%
4028657 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 58.0 5.60e-01 100.0% 78.3%
3539000 101.1.1.250 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 0.71 59.0 4.83e-01 100.0% 50.5%
3970951 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 48.0 4.92e-01 92.5% 74.0%
3361064 101.1.1.20 alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.70 61.0 5.21e-01 100.0% 94.3%
3510638 101.1.1.67 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.70 51.0 5.22e-01 94.3% 82.0%
3778380 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 61.0 5.62e-01 100.0% 84.3%
3288466 620.1.1.5 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N 0.69 47.0 3.35e-01 71.7% 60.6%
5036798 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.05e-01 100.0% 76.4%
5070623 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.69 50.0 5.19e-01 100.0% 84.0%
4982934 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 4.99e-01 100.0% 73.3%
3577837 101.1.1.250 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding_2 0.68 56.0 5.60e-01 100.0% 87.3%
4987624 102.1.1.119 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.68 59.0 5.32e-01 100.0% 84.0%
2556 101.1.1.43 alpha arrays › HTH › HTH › Three-helical HTH › Mor 0.68 48.0 5.01e-01 98.1% 83.3%
3409145 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.67 49.0 5.06e-01 98.1% 82.0%
3896790 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 52.0 4.67e-01 96.2% 60.0%
4976095 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 50.0 5.01e-01 100.0% 78.2%
3994952 104.1.1.0 alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain 0.67 57.0 4.89e-01 92.5% 80.0%
3277793 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 51.0 5.09e-01 94.3% 80.0%
3617983 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 58.0 3.39e-01 98.1% 96.8%
5077992 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 4.61e-01 100.0% 61.3%
4957054 101.1.2.743 alpha arrays › HTH › HTH › winged helix domain › PF28795 0.65 48.0 4.69e-01 100.0% 72.9%
3411217 101.1.1.319 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding, Myb_DNA-binding_2 0.64 58.0 4.05e-01 100.0% 35.2%
3227458 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 56.0 5.46e-01 100.0% 88.3%
3527457 101.1.1.52 alpha arrays › HTH › HTH › Three-helical HTH › BrkDBD 0.64 46.0 4.54e-01 98.1% 72.7%
4927193 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 56.0 4.51e-01 100.0% 87.6%
3987774 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 50.0 4.94e-01 94.3% 80.0%
3943304 101.1.6.16 alpha arrays › HTH › HTH › TrpR › HTH_22 0.63 55.0 4.60e-01 96.2% 63.3%
4926894 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.63 53.0 5.09e-01 100.0% 80.0%
4612394 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 57.0 4.73e-01 100.0% 98.9%
5061230 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.12e-01 100.0% 52.9%
4988046 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 46.0 4.74e-01 94.3% 86.0%
3971300 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.62 52.0 3.59e-01 96.2% 73.2%
3283917 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.62 47.0 4.80e-01 94.3% 86.0%
4979789 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.61 43.0 4.28e-01 98.1% 70.9%
3727621 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.09e-01 94.3% 56.2%
4942421 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.59 43.0 3.46e-01 81.1% 66.1%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 44.0 4.32e-01 100.0% 76.7%
3728726 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.58 46.0 4.13e-01 90.6% 61.3%
3390278 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.43e-01 96.2% 81.5%
3590776 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.56 45.0 3.80e-01 94.3% 51.6%
4939519 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.54 41.0 3.37e-01 100.0% 42.7%
3642010 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.53 43.0 3.72e-01 98.1% 72.6%