←Back to structures
IMGVR_UViG_3300025004_000236-3300025004-Ga0210035_10028891
Arc-VirIMGVR_UViG_3300025004_000236-3300025004-Ga0210035_10028891
Identity
- Kingdom:
- archaea
Quality
81.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-74
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zxdA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 43.0 | 3.77e-01 | 80.0% | 47.3% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.97e-01 | 71.7% | 80.3% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 41.0 | 4.50e-01 | 86.7% | 100.0% |
| 2isnB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 45.0 | 2.87e-01 | 86.7% | 59.9% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.57 | 39.0 | 3.43e-01 | 73.3% | 90.8% |
| 2zogA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 3.01e-01 | 78.3% | 93.1% |
| 3rgzA02 | 3.30.1490.310 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 44.0 | 4.42e-01 | 90.0% | 91.8% |
| 4zo2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.54 | 37.0 | 2.50e-01 | 76.7% | 93.9% |
| 1gtdA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.53 | 40.0 | 3.67e-01 | 83.3% | 100.0% |
| 4dmzA02 | 3.30.70.2880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 41.0 | 3.33e-01 | 95.0% | 97.8% |
| 5eo9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.36e-01 | 88.3% | 53.6% |
| 2c7hA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 37.0 | 3.45e-01 | 83.3% | 77.9% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 34.0 | 3.71e-01 | 80.0% | 95.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989242 | 139.2.1.0 ↗ | few secondary structure elements › Multiheme cytochromes › Di-heme elbow motif › Di-heme elbow motif | 0.82 | 76.0 | 4.45e-01 | 100.0% | 53.2% |
| 4024182 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 48.0 | 4.50e-01 | 100.0% | 58.7% |
| 3708288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 40.0 | 4.67e-01 | 88.3% | 100.0% |
| 119248 | 375.1.1.146 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 | 0.66 | 42.0 | 4.73e-01 | 95.0% | 92.9% |
| None | — | 0.64 | 38.0 | 4.16e-01 | 81.7% | 75.6% | |
| 4020959 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 43.0 | 3.06e-01 | 90.0% | 22.9% |
| 5055598 | 4139.1.1.1 ↗ | a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 | 0.62 | 45.0 | 4.39e-01 | 81.7% | 100.0% |
| 5022945 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.61 | 53.0 | 4.46e-01 | 100.0% | 95.2% |
| 4962193 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.60 | 51.0 | 4.33e-01 | 100.0% | 98.1% |
| 5039449 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.58 | 48.0 | 4.14e-01 | 98.3% | 91.4% |
| 3251492 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 47.0 | 3.26e-01 | 95.0% | 33.9% |
| 3402014 | 219.1.1.78 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Guanylate_cyc_2 | 0.55 | 43.0 | 2.98e-01 | 88.3% | 81.7% |
| 4517004 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.55 | 36.0 | 2.22e-01 | 70.0% | 21.8% |
| 4025154 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.53 | 40.0 | 2.53e-01 | 80.0% | 24.3% |
| 5016339 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.53 | 44.0 | 3.03e-01 | 96.7% | 30.0% |
D2
high
residues 84-150
Domain cluster:
representative