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IMGVR_UViG_3300025014_000214-3300025014-Ga0210023_100002729
Arc-VirIMGVR_UViG_3300025014_000214-3300025014-Ga0210023_100002729
Identity
- Kingdom:
- archaea
Quality
83.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-115
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 34.0 | 2.97e-01 | 74.1% | 64.9% |
D2
medium
residues 116-168
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00145.24 best | DNA_methylase | 54.6 | 1.70e-14 | 94.3% | 15.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ptaA01 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.88 | 65.0 | 4.64e-01 | 77.4% | 29.5% |
| 4jquB00 | 1.10.287.4310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 35.0 | 3.52e-01 | 86.8% | 46.3% |
| 1t9hA03 | 1.10.40.50 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 | 0.68 | 34.0 | 3.11e-01 | 88.7% | 38.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4598672 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.96 | 90.0 | 5.32e-01 | 100.0% | 15.8% |
| 4927198 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.95 | 89.0 | 5.21e-01 | 100.0% | 15.5% |
| 4416759 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.92 | 85.0 | 5.06e-01 | 100.0% | 16.2% |
| 4342862 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 78.0 | 4.96e-01 | 92.5% | 21.3% |
| 5004974 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.90 | 79.0 | 4.65e-01 | 94.3% | 14.3% |
| 3288569 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.90 | 82.0 | 4.84e-01 | 100.0% | 15.3% |
| 4120068 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.89 | 82.0 | 4.84e-01 | 100.0% | 14.7% |
| 5027522 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.87 | 76.0 | 5.05e-01 | 96.2% | 26.2% |
| 3645180 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.83 | 75.0 | 5.02e-01 | 100.0% | 54.7% |
| 3841729 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.64 | 40.0 | 3.38e-01 | 100.0% | 37.8% |
| 3990854 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.62 | 41.0 | 3.40e-01 | 100.0% | 40.0% |
| 4064277 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.57 | 44.0 | 4.24e-01 | 92.5% | 96.9% |
| 3670774 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.55 | 45.0 | 3.45e-01 | 92.5% | 78.4% |
| 4957621 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.55 | 44.0 | 3.42e-01 | 100.0% | 71.0% |
| 4982839 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.54 | 40.0 | 3.39e-01 | 83.0% | 49.0% |
| 4315777 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.54 | 41.0 | 3.24e-01 | 92.5% | 44.3% |
| 3269634 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.52 | 40.0 | 3.92e-01 | 96.2% | 83.3% |