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IMGVR_UViG_3300025016_000213-3300025016-Ga0210014_10114037
Arc-VirIMGVR_UViG_3300025016_000213-3300025016-Ga0210014_10114037
Identity
- Kingdom:
- archaea
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 9-49
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ks6Q03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.58 | 38.0 | 2.61e-01 | 80.5% | 15.8% |
| 2loqA01 | 6.10.110.10 | Special › Helix non-globular › Serum Albumin; Chain A, Domain 1 › | 0.56 | 41.0 | 3.38e-01 | 100.0% | 40.5% |
| 4d8qF03 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.55 | 45.0 | 3.07e-01 | 95.1% | 26.5% |
| 2od1A00 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 36.0 | 3.51e-01 | 75.6% | 70.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3397634 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.90 | 64.0 | 5.57e-01 | 75.6% | 51.7% |
| 3622966 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.84 | 61.0 | 6.25e-01 | 85.4% | 80.0% |
| 3937741 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.77 | 58.0 | 5.89e-01 | 82.9% | 85.0% |
| 3537307 | 377.1.1.34 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › FAM76 | 0.74 | 61.0 | 4.48e-01 | 92.7% | 40.9% |
| 4954542 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.73 | 49.0 | 5.23e-01 | 73.2% | 82.9% |
| 5024136 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.69 | 56.0 | 4.01e-01 | 97.6% | 94.1% |
| 4491477 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.68 | 47.0 | 3.18e-01 | 75.6% | 21.3% |
| 3276223 | 109.4.1.682 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N | 0.66 | 46.0 | 3.07e-01 | 75.6% | 41.8% |
| 3209169 | 375.1.1.274 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ecl1 | 0.62 | 42.0 | 4.60e-01 | 73.2% | 96.7% |
| 3489858 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.58 | 40.0 | 3.89e-01 | 78.0% | 70.0% |
| 3897526 | 7579.1.1.81 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 | 0.57 | 44.0 | 2.71e-01 | 87.8% | 62.7% |
| 3937698 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.56 | 41.0 | 2.50e-01 | 78.0% | 52.5% |
| 3825659 | 109.4.1.163 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N | 0.56 | 46.0 | 2.72e-01 | 95.1% | 33.0% |
| 3700937 | 377.9.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT | 0.55 | 37.0 | 3.81e-01 | 78.0% | 90.0% |
| 3405764 | 377.9.1.9 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › MYND_ZMYND11_ZMYD8 | 0.54 | 37.0 | 3.73e-01 | 75.6% | 85.0% |
| 4433348 | 207.1.1.76 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_6,LRR_8 | 0.50 | 36.0 | 2.00e-01 | 87.8% | 26.2% |
| 3923809 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.50 | 39.0 | 2.81e-01 | 92.7% | 28.6% |
D2
medium
residues 52-88
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wevA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 59.0 | 5.01e-01 | 100.0% | 70.3% |
| 7r7cr01 | 2.40.10.310 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 47.0 | 3.93e-01 | 73.0% | 100.0% |
| 2fe3A02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.69 | 59.0 | 5.13e-01 | 97.3% | 93.0% |
| 4mtdA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.68 | 58.0 | 4.85e-01 | 97.3% | 84.1% |
| 2xigA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.64 | 53.0 | 4.67e-01 | 91.9% | 92.7% |
| 7ylrA03 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.64 | 43.0 | 3.36e-01 | 70.3% | 100.0% |
| 7yuiB01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 56.0 | 4.21e-01 | 100.0% | 42.0% |
| 3mwmA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.63 | 50.0 | 4.52e-01 | 89.2% | 96.2% |
| 6kykA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 41.0 | 3.34e-01 | 75.7% | 97.6% |
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.59 | 49.0 | 4.72e-01 | 97.3% | 81.4% |
| 1aalB00 | 4.10.410.10 | Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain | 0.59 | 40.0 | 3.54e-01 | 70.3% | 45.6% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.59 | 46.0 | 4.12e-01 | 86.5% | 73.6% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 46.0 | 4.52e-01 | 89.2% | 87.5% |
| 7w42B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 42.0 | 2.81e-01 | 89.2% | 54.6% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.56 | 47.0 | 3.97e-01 | 97.3% | 73.0% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 43.0 | 3.58e-01 | 97.3% | 100.0% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 43.0 | 3.52e-01 | 97.3% | 100.0% |
| 6xi7B02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 42.0 | 4.19e-01 | 97.3% | 87.2% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.52 | 42.0 | 3.12e-01 | 97.3% | 70.3% |
| 3hh2D04 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.52 | 42.0 | 3.53e-01 | 97.3% | 75.7% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 45.0 | 3.92e-01 | 100.0% | 89.3% |
| 1kg1A02 | 2.30.30.460 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.55e-01 | 73.0% | 96.9% |
| 6x6uA01 | 3.60.9.10 | Alpha Beta › 4-Layer Sandwich › Aldehyde Ferredoxin Oxidoreductase; A, domain 1 › Aldehyde ferredoxin oxidoreductase, N-terminal domain | 0.50 | 34.0 | 2.26e-01 | 75.7% | 51.7% |
| 1z1nX02 | 3.90.10.10 | Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 | 0.50 | 35.0 | 2.62e-01 | 70.3% | 31.6% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4201209 | 375.6.1.1 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › FlhC | 0.75 | 55.0 | 5.90e-01 | 89.2% | 100.0% |
| 5050300 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 61.0 | 6.27e-01 | 100.0% | 100.0% |
| 3392574 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.74 | 64.0 | 6.04e-01 | 100.0% | 80.0% |
| 3197786 | 376.1.3.75 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_Tbcl_Rhp7 | 0.68 | 60.0 | 5.45e-01 | 100.0% | 74.0% |
| 4530224 | 4987.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31 | 0.68 | 53.0 | 5.15e-01 | 100.0% | 77.8% |
| 3189914 | 375.1.1.221 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf_Tbcl_Rhp7 | 0.67 | 57.0 | 5.82e-01 | 94.6% | 100.0% |
| 3203266 | 376.1.2.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 | 0.66 | 58.0 | 5.40e-01 | 100.0% | 80.0% |
| 4015777 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.66 | 54.0 | 4.93e-01 | 100.0% | 76.4% |
| 4003645 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 51.0 | 5.27e-01 | 94.6% | 94.3% |
| 4669573 | 4987.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31 | 0.65 | 51.0 | 4.42e-01 | 100.0% | 53.8% |
| 4953421 | 375.2.1.0 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like | 0.64 | 43.0 | 4.55e-01 | 91.9% | 83.3% |
| 3397474 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 57.0 | 5.56e-01 | 100.0% | 95.0% |
| 3172042 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.64 | 54.0 | 4.49e-01 | 100.0% | 95.7% |
| 3701761 | 375.1.1.133 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ribbon_3 | 0.64 | 43.0 | 4.39e-01 | 89.2% | 74.3% |
| 3337279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 49.0 | 4.99e-01 | 94.6% | 94.3% |
| 4940040 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.63 | 55.0 | 5.17e-01 | 100.0% | 84.4% |
| 3468455 | 376.1.3.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX | 0.63 | 55.0 | 5.40e-01 | 100.0% | 92.5% |
| 3493053 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.63 | 51.0 | 5.03e-01 | 97.3% | 90.0% |
| 3594477 | 377.1.3.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › Zinc-binding subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 55.0 | 5.40e-01 | 100.0% | 92.5% |
| 3734963 | 376.1.1.66 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 | 0.62 | 52.0 | 5.30e-01 | 97.3% | 100.0% |
| 2859147 | 7091.1.1.1 ↗ | a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 | 0.60 | 39.0 | 2.59e-01 | 86.5% | 16.7% |
| 3495822 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.58 | 50.0 | 3.43e-01 | 100.0% | 36.3% |
| 3269360 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.58 | 39.0 | 4.14e-01 | 91.9% | 83.3% |
| 3482935 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.56 | 43.0 | 3.52e-01 | 100.0% | 82.2% |
| 3418268 | 375.1.1.229 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TEX13 | 0.54 | 37.0 | 3.86e-01 | 91.9% | 83.3% |
| 4019347 | 376.1.1.12 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING-like | 0.53 | 43.0 | 3.89e-01 | 97.3% | 67.3% |
| 3777746 | 375.1.1.78 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-3CxxC_2 | 0.53 | 37.0 | 3.63e-01 | 89.2% | 66.7% |
| 3918443 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 43.0 | 4.09e-01 | 97.3% | 77.8% |
| 4180431 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.52 | 37.0 | 3.98e-01 | 89.2% | 96.7% |
| 4935171 | 169.1.1.3 ↗ | alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_N | 0.52 | 35.0 | 2.00e-01 | 73.0% | 19.7% |
| 3785476 | 375.1.1.57 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N | 0.51 | 41.0 | 3.89e-01 | 89.2% | 77.8% |