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IMGVR_UViG_3300025018_003007-3300025018-Ga0210043_10091486
Arc-VirIMGVR_UViG_3300025018_003007-3300025018-Ga0210043_10091486
Identity
- Kingdom:
- archaea
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-50
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jraA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.60 | 38.0 | 4.15e-01 | 84.0% | 76.2% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 42.0 | 2.48e-01 | 76.0% | 96.5% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 38.0 | 3.41e-01 | 100.0% | 45.6% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 46.0 | 3.41e-01 | 100.0% | 57.9% |
| 2debA03 | 3.30.559.70 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 | 0.56 | 45.0 | 2.96e-01 | 100.0% | 79.8% |
| 6fucA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 36.0 | 3.02e-01 | 82.0% | 38.4% |
| 2avnA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 38.0 | 2.51e-01 | 88.0% | 15.0% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 38.0 | 3.24e-01 | 100.0% | 42.2% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 39.0 | 3.33e-01 | 98.0% | 46.1% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 42.0 | 2.72e-01 | 96.0% | 26.1% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 31.0 | 3.00e-01 | 92.0% | 48.3% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 41.0 | 2.85e-01 | 100.0% | 87.9% |
| 6g6qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 38.0 | 2.96e-01 | 92.0% | 98.6% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.50 | 42.0 | 2.96e-01 | 100.0% | 92.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3782440 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.70 | 40.0 | 2.49e-01 | 86.0% | 10.3% |
| 3213123 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 39.0 | 4.75e-01 | 92.0% | 100.0% |
| 5022626 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.63 | 39.0 | 3.66e-01 | 92.0% | 51.7% |
| 4022807 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.60 | 41.0 | 2.29e-01 | 100.0% | 5.2% |
| 4587271 | 9002.1.1.1 ↗ | a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 | 0.60 | 42.0 | 4.23e-01 | 98.0% | 72.0% |
| 4964255 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.60 | 41.0 | 2.84e-01 | 92.0% | 20.0% |
| 3880308 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.58 | 40.0 | 3.51e-01 | 100.0% | 45.0% |
| 3890078 | 4357.1.1.2 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_1 | 0.58 | 39.0 | 3.41e-01 | 100.0% | 42.4% |
| 4968842 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.82e-01 | 88.0% | 53.8% |
| 4418033 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.56 | 40.0 | 2.35e-01 | 76.0% | 9.6% |
| 4558880 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.56 | 40.0 | 2.34e-01 | 76.0% | 9.8% |
| 3385696 | 854.1.1.0 ↗ | extended segments › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE › Outer membrane virulence protein yopE | 0.56 | 41.0 | 3.60e-01 | 88.0% | 51.9% |
| 4954114 | 4203.1.1.0 ↗ | few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like | 0.55 | 36.0 | 3.50e-01 | 92.0% | 58.3% |
| 5002533 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 39.0 | 3.19e-01 | 100.0% | 38.1% |
| 3422471 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.54 | 42.0 | 2.81e-01 | 90.0% | 46.1% |
| 2753367 | 219.1.1.43 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase | 0.53 | 45.0 | 3.05e-01 | 98.0% | 30.3% |
| 3998700 | 3998.1.1.1 ↗ | alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 | 0.53 | 33.0 | 2.84e-01 | 72.0% | 40.0% |
| 3608568 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 42.0 | 2.63e-01 | 90.0% | 28.5% |
| 3402884 | 304.103.1.3 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › MMADHC | 0.52 | 39.0 | 2.94e-01 | 88.0% | 75.3% |
| 1556157 | 6029.1.1.1 ↗ | beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP | 0.52 | 38.0 | 4.12e-01 | 100.0% | 92.9% |
| 1501287 | 601.52.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar hook-associated protein 1 helical domain › Flagellar hook-associated protein 1 helical domain › FlgK_D1 | 0.52 | 40.0 | 2.69e-01 | 96.0% | 62.0% |
| 5001141 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 40.0 | 3.30e-01 | 100.0% | 45.0% |
| 5072896 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.51 | 35.0 | 2.37e-01 | 76.0% | 24.6% |
| 3856159 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.51 | 42.0 | 2.39e-01 | 96.0% | 7.9% |
| 2453130 | 702.1.1.4 ↗ | beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack | 0.50 | 42.0 | 2.70e-01 | 94.0% | 25.0% |