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IMGVR_UViG_3300025021_000153-3300025021-Ga0210017_10200427
Arc-VirIMGVR_UViG_3300025021_000153-3300025021-Ga0210017_10200427
Identity
- Kingdom:
- archaea
Quality
86.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 53-120
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5bn3A04 | 1.10.1140.10 | Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 | 0.67 | 52.0 | 4.17e-01 | 85.3% | 67.6% |
| 2lwdA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.65 | 43.0 | 3.85e-01 | 82.4% | 47.9% |
| 4hl4A02 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.65 | 54.0 | 4.42e-01 | 97.1% | 66.4% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 46.0 | 4.51e-01 | 77.9% | 91.9% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 43.0 | 3.39e-01 | 72.1% | 72.7% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 42.0 | 4.03e-01 | 72.1% | 81.0% |
| 4bkxA01 | 4.10.1240.50 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.60 | 49.0 | 4.28e-01 | 95.6% | 62.8% |
| 2jp7A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 40.0 | 4.33e-01 | 94.1% | 84.2% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 51.0 | 4.76e-01 | 95.6% | 84.5% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 39.0 | 3.89e-01 | 86.8% | 65.7% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 47.0 | 4.32e-01 | 92.6% | 67.7% |
| 1tk1A00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.58 | 45.0 | 3.23e-01 | 85.3% | 87.2% |
| 3nqwA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 51.0 | 3.78e-01 | 100.0% | 72.5% |
| 2l2dA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.57 | 36.0 | 3.59e-01 | 86.8% | 60.3% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.56 | 44.0 | 2.96e-01 | 85.3% | 23.4% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 40.0 | 4.21e-01 | 95.6% | 89.8% |
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.55 | 45.0 | 3.53e-01 | 98.5% | 75.1% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.55 | 42.0 | 3.79e-01 | 88.2% | 72.0% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.54 | 37.0 | 3.77e-01 | 89.7% | 76.1% |
| 3frwB00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.53 | 38.0 | 3.40e-01 | 94.1% | 53.1% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.53 | 41.0 | 3.35e-01 | 82.4% | 75.2% |
| 1z6tA03 | 1.10.8.430 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Helical domain of apoptotic protease-activating factors | 0.53 | 43.0 | 4.11e-01 | 92.6% | 91.4% |
| 4gewA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.52 | 37.0 | 3.67e-01 | 94.1% | 70.1% |
| 2ozbE02 | 1.10.246.90 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain | 0.52 | 45.0 | 3.94e-01 | 100.0% | 85.0% |
| 6ncvA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 37.0 | 3.42e-01 | 76.5% | 83.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 39.0 | 3.35e-01 | 79.4% | 84.3% |
| 3w0lD01 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 38.0 | 3.43e-01 | 88.2% | 57.4% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3300274 | 143.1.1.2 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 | 0.72 | 61.0 | 6.20e-01 | 95.6% | 100.0% |
| 3664088 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.70 | 59.0 | 5.99e-01 | 95.6% | 100.0% |
| 4992926 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.68 | 56.0 | 5.44e-01 | 89.7% | 88.0% |
| 4255543 | 7061.1.1.1 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 | 0.64 | 53.0 | 5.00e-01 | 95.6% | 75.3% |
| 3673391 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.63 | 48.0 | 4.60e-01 | 82.4% | 85.0% |
| 4027118 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.63 | 46.0 | 4.50e-01 | 77.9% | 89.3% |
| 2408 | 531.1.1.1 ↗ | alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C | 0.62 | 43.0 | 3.77e-01 | 72.1% | 85.1% |
| 5043732 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.62 | 51.0 | 5.06e-01 | 88.2% | 91.4% |
| 3922549 | 7061.1.1.1 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 | 0.60 | 48.0 | 4.58e-01 | 89.7% | 78.8% |
| 3703522 | 103.1.1.3 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N | 0.59 | 50.0 | 4.89e-01 | 95.6% | 96.0% |
| 4309292 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.59 | 50.0 | 3.27e-01 | 95.6% | 51.4% |
| 4982105 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.58 | 42.0 | 4.07e-01 | 76.5% | 93.3% |
| 3380884 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.58 | 48.0 | 4.70e-01 | 94.1% | 92.0% |
| 4170287 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 50.0 | 3.59e-01 | 100.0% | 84.7% |
| 3749044 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.58 | 42.0 | 4.34e-01 | 100.0% | 91.7% |
| 3986491 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.57 | 44.0 | 4.06e-01 | 80.9% | 82.4% |
| 3596786 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.81e-01 | 88.2% | 80.0% |
| 3250261 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.57 | 43.0 | 4.01e-01 | 85.3% | 76.7% |
| 5068174 | 5059.1.1.11 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM144 | 0.56 | 46.0 | 2.95e-01 | 89.7% | 64.4% |
| 5064982 | 3290.1.1.1 ↗ | alpha complex topology › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › Cytosolic helical domain in ferrous iron transport protein B › FeoB_Cyto | 0.55 | 38.0 | 3.64e-01 | 91.2% | 61.3% |
| 3949869 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.55 | 43.0 | 4.30e-01 | 85.3% | 90.0% |
| 3265419 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.55 | 44.0 | 4.17e-01 | 88.2% | 98.8% |
| 3705490 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.54 | 39.0 | 4.16e-01 | 92.6% | 100.0% |
| 3680871 | 103.1.1.22 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl | 0.53 | 42.0 | 4.02e-01 | 95.6% | 76.2% |
| 3481950 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.50 | 44.0 | 2.72e-01 | 100.0% | 16.6% |
| 3284489 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.50 | 39.0 | 2.91e-01 | 92.6% | 96.8% |