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IMGVR_UViG_3300025078_000787-3300025078-Ga0208668_100043318
Arc-VirIMGVR_UViG_3300025078_000787-3300025078-Ga0208668_100043318
Identity
- Kingdom:
- archaea
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-57
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.79 | 54.0 | 5.37e-01 | 71.9% | 68.3% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.75 | 52.0 | 4.77e-01 | 73.7% | 78.7% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.72 | 51.0 | 4.79e-01 | 78.9% | 60.3% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.68 | 57.0 | 4.69e-01 | 91.2% | 90.1% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 47.0 | 4.34e-01 | 75.4% | 93.4% |
| 7vwtA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.67 | 51.0 | 3.23e-01 | 84.2% | 83.8% |
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.67 | 48.0 | 4.89e-01 | 80.7% | 83.0% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.66 | 46.0 | 4.77e-01 | 73.7% | 80.8% |
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.66 | 47.0 | 5.09e-01 | 82.5% | 100.0% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.65 | 44.0 | 3.01e-01 | 70.2% | 40.3% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 44.0 | 2.89e-01 | 73.7% | 88.4% |
| 1vkcA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 52.0 | 4.05e-01 | 96.5% | 84.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 48.0 | 4.30e-01 | 91.2% | 71.6% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.60 | 48.0 | 4.64e-01 | 100.0% | 79.7% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 41.0 | 3.95e-01 | 71.9% | 73.8% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 46.0 | 3.16e-01 | 87.7% | 73.1% |
| 3d3qB02 | 1.10.20.140 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.56 | 41.0 | 3.92e-01 | 96.5% | 67.1% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.56 | 44.0 | 3.86e-01 | 87.7% | 74.4% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.54 | 46.0 | 3.35e-01 | 96.5% | 60.4% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.53 | 42.0 | 3.51e-01 | 87.7% | 58.4% |
| 3gzfD00 | 1.10.150.420 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Coronavirus nonstructural protein 4 C-terminus | 0.51 | 38.0 | 3.27e-01 | 78.9% | 71.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4558420 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.79 | 56.0 | 5.17e-01 | 78.9% | 57.3% |
| 3625189 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.78 | 57.0 | 3.52e-01 | 77.2% | 34.9% |
| 3426642 | 375.1.1.96 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YABBY | 0.77 | 53.0 | 5.56e-01 | 75.4% | 82.0% |
| 4543805 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.77 | 53.0 | 4.10e-01 | 73.7% | 33.3% |
| 4675621 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.76 | 69.0 | 4.60e-01 | 100.0% | 30.8% |
| 5061662 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.74 | 67.0 | 4.33e-01 | 100.0% | 26.7% |
| 3595202 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 50.0 | 3.36e-01 | 71.9% | 21.4% |
| 4344838 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.73 | 51.0 | 4.65e-01 | 78.9% | 53.8% |
| 3297133 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.72 | 60.0 | 5.58e-01 | 96.5% | 88.0% |
| 3297054 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.72 | 64.0 | 6.16e-01 | 98.2% | 96.9% |
| 3864894 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.72 | 50.0 | 4.47e-01 | 78.9% | 50.6% |
| 3398172 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.70 | 51.0 | 4.20e-01 | 80.7% | 42.9% |
| 4015292 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.69 | 54.0 | 4.88e-01 | 86.0% | 88.7% |
| 3506153 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.69 | 50.0 | 4.51e-01 | 78.9% | 55.4% |
| 4224925 | 4336.2.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › EnY2 | 0.69 | 48.0 | 4.17e-01 | 73.7% | 47.8% |
| 3198596 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.69 | 55.0 | 4.70e-01 | 89.5% | 76.8% |
| 3643488 | 192.15.1.11 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › CemA | 0.69 | 47.0 | 4.34e-01 | 71.9% | 58.7% |
| 3809576 | 103.4.1.5 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 | 0.69 | 47.0 | 4.59e-01 | 73.7% | 66.2% |
| 4166427 | 109.4.1.307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 | 0.67 | 46.0 | 2.75e-01 | 73.7% | 16.2% |
| 3893243 | 190.1.1.9 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_WDHD1 | 0.67 | 48.0 | 4.92e-01 | 77.2% | 81.8% |
| 3820506 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.66 | 48.0 | 4.02e-01 | 94.7% | 45.0% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.65 | 52.0 | 5.28e-01 | 100.0% | 90.9% |
| 3961618 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.65 | 45.0 | 4.47e-01 | 73.7% | 78.3% |
| 3970007 | 3502.1.1.0 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein | 0.64 | 48.0 | 4.50e-01 | 84.2% | 82.7% |
| 185221 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.63 | 47.0 | 4.49e-01 | 84.2% | 70.1% |
| 3361803 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.60 | 40.0 | 4.24e-01 | 70.2% | 80.0% |
| 4999212 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 42.0 | 2.74e-01 | 73.7% | 33.6% |
| 4002713 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 49.0 | 3.01e-01 | 96.5% | 18.4% |
| 3690556 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.58 | 40.0 | 4.01e-01 | 75.4% | 76.7% |
| 3222769 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.53 | 38.0 | 2.41e-01 | 75.4% | 55.9% |
D2
medium
residues 58-114
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.57 | 43.0 | 4.51e-01 | 82.5% | 90.4% |
| 2rgoB03 | 1.10.8.870 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Alpha-glycerophosphate oxidase, cap domain | 0.55 | 42.0 | 3.43e-01 | 86.0% | 50.9% |
| 3d8bB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.54 | 39.0 | 3.57e-01 | 80.7% | 70.7% |
| 3thiA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 38.0 | 2.82e-01 | 78.9% | 90.9% |
| 1vbfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 39.0 | 2.74e-01 | 84.2% | 85.7% |
| 2kruA01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.51 | 38.0 | 3.99e-01 | 86.0% | 90.4% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.51 | 35.0 | 2.35e-01 | 75.4% | 42.3% |