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IMGVR_UViG_3300025078_001596-3300025078-Ga0208668_10023921

Arc-Vir

IMGVR_UViG_3300025078_001596-3300025078-Ga0208668_10023921

Identity

Kingdom:
archaea

Quality

96.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-162
PDB
Domain cluster: rep: FN667788.1__CBJ93864.1__CPT_0055__00055__D7-157
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01966.29 best HD 38.2 2.20e-09 85.7% 86.2%
D2 high residues 173-218
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.45e-01 76.1% 47.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.74 46.0 3.95e-01 73.9% 38.2%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.71 51.0 4.05e-01 80.4% 36.3%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 55.0 5.38e-01 91.3% 83.0%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.70 50.0 4.82e-01 78.3% 67.9%
2e1qC10 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.69 45.0 3.26e-01 76.1% 24.2%
3fewX02 3.30.1310.40 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › 0.69 52.0 4.08e-01 82.6% 55.8%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.68 49.0 4.69e-01 78.3% 67.3%
1uxtA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.68 47.0 2.91e-01 73.9% 13.2%
3uorB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 57.0 3.76e-01 100.0% 67.0%
8gf5C01 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 47.0 3.45e-01 76.1% 33.1%
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.66 47.0 3.70e-01 76.1% 54.5%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 55.0 3.80e-01 100.0% 53.4%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 53.0 3.16e-01 100.0% 52.9%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.65 46.0 3.62e-01 73.9% 34.4%
2lahA00 1.25.40.430 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 44.0 3.02e-01 71.7% 21.9%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.62 53.0 4.26e-01 97.8% 72.5%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.10e-01 76.1% 25.0%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 48.0 3.37e-01 100.0% 66.3%
3kzxA02 1.10.150.730 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 47.0 4.36e-01 93.5% 90.3%
2p67A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.56 44.0 4.07e-01 95.7% 67.7%
4wesB03 1.20.89.10 Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 0.54 42.0 3.60e-01 89.1% 65.8%
2feaA02 3.90.1470.20 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › 0.52 42.0 3.45e-01 100.0% 91.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4926814 7513.1.1.1 ↗ a/b three-layered sandwiches › CofD-like › CofD-like › CofD-like › CofD 0.83 73.0 4.33e-01 97.8% 24.8%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 50.0 4.61e-01 73.9% 51.7%
5039496 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.76 54.0 4.36e-01 76.1% 38.9%
4936146 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 53.0 5.07e-01 76.1% 65.5%
4594328 181.1.1.2 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N 0.75 64.0 5.56e-01 100.0% 62.7%
4933155 198.1.1.27 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.75 54.0 4.47e-01 78.3% 45.9%
4929489 101.1.2.897 ↗ alpha arrays › HTH › HTH › winged helix domain › Zn_ribbon_2 0.75 52.0 4.67e-01 73.9% 53.8%
4940127 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.75 64.0 4.81e-01 100.0% 41.7%
3415735 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.74 63.0 5.04e-01 97.8% 75.8%
3413092 541.1.1.0 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.74 53.0 5.35e-01 76.1% 86.7%
3601396 7514.1.1.0 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.74 55.0 3.59e-01 80.4% 20.5%
5003091 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 62.0 5.76e-01 100.0% 81.7%
4964438 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.73 61.0 4.57e-01 97.8% 39.2%
4864636 7008.1.1.1 ↗ alpha arrays › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › N-terminal domain of hexon-associated protein (IIIa) › Hex_IIIa 0.72 51.0 4.08e-01 78.3% 38.1%
3219669 548.1.1.1 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.71 48.0 4.77e-01 73.9% 66.0%
5050798 2004.1.1.67 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA 0.70 51.0 3.18e-01 80.4% 20.5%
4942992 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 57.0 5.63e-01 100.0% 94.0%
4058000 1.1.7.82 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arg_decarbox_C 0.66 48.0 3.00e-01 78.3% 14.5%
4167109 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.63 55.0 3.12e-01 100.0% 10.1%
3392566 3929.1.1.2 ↗ alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain › DUF7084 0.59 43.0 4.31e-01 82.6% 100.0%
3709296 5050.1.1.15 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like 0.57 46.0 2.86e-01 91.3% 41.1%
3980387 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 42.0 2.96e-01 91.3% 57.0%