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IMGVR_UViG_3300025090_000023-3300025090-Ga0209080_10035622
Arc-VirIMGVR_UViG_3300025090_000023-3300025090-Ga0209080_10035622
Identity
- Kingdom:
- archaea
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 107-157_559-669
Domain cluster:
rep: IMGVR_UViG_3300010428_000133-3300010428-Ga0134103_100387811__D14-57_418-522
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nreA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.63 | 51.0 | 4.14e-01 | 84.6% | 57.0% |
| 3k25A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 49.0 | 4.00e-01 | 84.6% | 51.7% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.55 | 49.0 | 4.17e-01 | 100.0% | 60.2% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044412 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.66 | 54.0 | 4.63e-01 | 100.0% | 55.9% |
| 3272034 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.65 | 60.0 | 4.69e-01 | 99.4% | 55.0% |
| 3782514 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.60 | 56.0 | 4.80e-01 | 100.0% | 76.0% |
| 3186199 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.60 | 56.0 | 4.51e-01 | 100.0% | 94.9% |
| 4345168 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.58 | 52.0 | 4.40e-01 | 93.2% | 72.0% |
| 3897238 | 12.3.1.42 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2152 | 0.57 | 40.0 | 3.34e-01 | 100.0% | 43.4% |
| 3801721 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.55 | 27.0 | 3.38e-01 | 85.8% | 75.8% |
| 5082784 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 29.0 | 3.77e-01 | 84.6% | 97.8% |
D2
high
residues 246-404
Domain cluster:
rep: IMGVR_UViG_3300037104_001102-3300037104-Ga0395706_000083_69488_71470__D124-276
D3
medium
residues 1-104
D4
medium
residues 407-481
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 38.0 | 3.47e-01 | 81.3% | 76.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003416 | 3487.1.1.0 ↗ | a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 | 0.53 | 36.0 | 3.21e-01 | 72.0% | 100.0% |
| 2987890 | 1.1.13.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CoV_NSP9 | 0.52 | 36.0 | 3.64e-01 | 73.3% | 73.1% |