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IMGVR_UViG_3300025117_001557-3300025117-Ga0208958_100056117

Arc-Vir

IMGVR_UViG_3300025117_001557-3300025117-Ga0208958_100056117

Identity

Kingdom:
archaea

Quality

88.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-70
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ychA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 37.0 2.95e-01 72.9% 49.7%
6fdmA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 35.0 3.12e-01 72.9% 84.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3451138 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.56 43.0 2.85e-01 87.1% 35.2%
1565410 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.91e-01 98.6% 77.4%
4649111 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 44.0 2.54e-01 98.6% 50.5%
5061644 304.11.1.15 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Peptidase_S8 0.52 37.0 3.36e-01 74.3% 69.5%
3888016 2007.1.6.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Iso_dh 0.51 42.0 3.78e-01 94.3% 91.0%
3218122 376.1.3.11 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 0.50 34.0 2.75e-01 70.0% 35.0%
D2 medium residues 71-120
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13403.12 best Hint_2 28.9 1.80e-06 92.0% 25.9%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.88 72.0 5.06e-01 90.0% 82.3%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.83 75.0 5.37e-01 100.0% 82.6%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.82 69.0 4.53e-01 92.0% 87.1%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 71.0 5.08e-01 100.0% 80.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 3.83e-01 78.0% 53.2%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.53 40.0 3.40e-01 84.0% 77.9%
2arpF02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.52 34.0 3.10e-01 74.0% 47.2%
2rqbA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.50 39.0 3.00e-01 92.0% 87.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934481 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.93 81.0 5.54e-01 92.0% 86.5%
4941327 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.93 81.0 5.64e-01 96.0% 32.4%
3602706 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.90 81.0 5.69e-01 100.0% 34.8%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 76.0 5.51e-01 90.0% 82.5%
4993732 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.89 77.0 5.61e-01 94.0% 79.2%
5037092 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.88 77.0 6.76e-01 94.0% 72.9%
4180552 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 74.0 5.00e-01 92.0% 27.9%
3234017 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.87 73.0 4.87e-01 90.0% 30.2%
2675767 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 75.0 5.20e-01 96.0% 80.5%
4932851 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.85 76.0 5.44e-01 98.0% 71.1%
4945569 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.85 77.0 5.29e-01 100.0% 79.4%
2553113 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 74.0 5.37e-01 96.0% 80.5%
4457379 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.84 73.0 5.16e-01 96.0% 75.9%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.83 75.0 5.37e-01 100.0% 82.6%
4127166 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.82 74.0 5.20e-01 100.0% 84.7%
3603738 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.81 70.0 5.01e-01 96.0% 75.0%
1758564 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.80 70.0 4.74e-01 96.0% 28.2%
4930925 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 69.0 4.96e-01 98.0% 80.7%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.77 68.0 4.88e-01 100.0% 76.6%
5067372 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.52 35.0 3.35e-01 84.0% 58.3%