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IMGVR_UViG_3300025124_000034-3300025124-Ga0210058_10009081
Arc-VirIMGVR_UViG_3300025124_000034-3300025124-Ga0210058_10009081
Identity
- Kingdom:
- archaea
Quality
72.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-38
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.73 | 52.0 | 3.00e-01 | 80.6% | 8.6% |
| 3en9A03 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.72 | 52.0 | 4.04e-01 | 77.4% | 32.9% |
| 2ecfA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.72 | 59.0 | 3.28e-01 | 100.0% | 17.5% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.72 | 52.0 | 3.05e-01 | 87.1% | 8.8% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.71 | 48.0 | 3.44e-01 | 71.0% | 23.7% |
| 6whcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 47.0 | 2.83e-01 | 71.0% | 10.0% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.68 | 48.0 | 4.27e-01 | 80.6% | 71.2% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 47.0 | 2.82e-01 | 80.6% | 11.5% |
| 2d8iA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.67 | 46.0 | 3.42e-01 | 71.0% | 26.1% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 45.0 | 2.72e-01 | 80.6% | 10.3% |
| 1auiA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.63 | 50.0 | 2.81e-01 | 93.5% | 8.5% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 42.0 | 2.76e-01 | 83.9% | 14.9% |
| 1b35B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 43.0 | 2.66e-01 | 87.1% | 60.8% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 42.0 | 3.20e-01 | 74.2% | 26.7% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.61 | 43.0 | 2.93e-01 | 93.5% | 45.1% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.60 | 41.0 | 3.26e-01 | 71.0% | 28.6% |
| 2fdoA00 | 3.30.1970.10 | Alpha Beta › 2-Layer Sandwich › AF2331-like fold › AF2331-like | 0.58 | 38.0 | 3.08e-01 | 90.3% | 29.0% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.58 | 44.0 | 3.06e-01 | 100.0% | 51.5% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.10e-01 | 90.3% | 100.0% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 39.0 | 3.48e-01 | 100.0% | 43.9% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 38.0 | 2.34e-01 | 71.0% | 8.9% |
| 5hn3A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.55 | 40.0 | 2.34e-01 | 71.0% | 6.9% |
| 3ksrA01 | 6.20.370.100 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.55 | 38.0 | 3.80e-01 | 71.0% | 100.0% |
| 4aqsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 37.0 | 2.30e-01 | 71.0% | 10.0% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 2.84e-01 | 96.8% | 63.5% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 38.0 | 3.64e-01 | 71.0% | 51.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.85 | 59.0 | 4.60e-01 | 71.0% | 33.8% |
| 3475708 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.79 | 55.0 | 4.97e-01 | 74.2% | 52.3% |
| 3995477 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.77 | 61.0 | 5.09e-01 | 96.8% | 50.9% |
| 3708645 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.77 | 53.0 | 3.64e-01 | 71.0% | 21.0% |
| 2573961 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 56.0 | 4.87e-01 | 80.6% | 50.0% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.75 | 52.0 | 3.16e-01 | 74.2% | 11.2% |
| 5049092 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.75 | 51.0 | 2.90e-01 | 71.0% | 7.2% |
| 3472076 | 101.1.1.7 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 | 0.74 | 54.0 | 3.55e-01 | 80.6% | 20.0% |
| 3215682 | 101.1.1.7 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 | 0.74 | 53.0 | 3.51e-01 | 77.4% | 19.2% |
| 4848452 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.73 | 51.0 | 4.44e-01 | 74.2% | 46.9% |
| 3879162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 55.0 | 4.06e-01 | 90.3% | 60.0% |
| 4979109 | 2006.1.4.56 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 | 0.71 | 52.0 | 3.68e-01 | 100.0% | 24.4% |
| 4406321 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 50.0 | 3.95e-01 | 77.4% | 34.3% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.70 | 49.0 | 3.06e-01 | 77.4% | 12.3% |
| 3418888 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 51.0 | 4.95e-01 | 80.6% | 74.3% |
| 3575704 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.70 | 48.0 | 3.07e-01 | 71.0% | 14.2% |
| 3925690 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.69 | 50.0 | 3.89e-01 | 80.6% | 36.0% |
| 3491344 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 3.64e-01 | 77.4% | 28.6% |
| 4117447 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.69 | 54.0 | 3.22e-01 | 96.8% | 60.5% |
| 4000368 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.69 | 52.0 | 3.15e-01 | 87.1% | 11.7% |
| 3580898 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.69 | 49.0 | 3.22e-01 | 87.1% | 16.9% |
| 3719211 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.67 | 48.0 | 4.15e-01 | 80.6% | 47.3% |
| 4238837 | 376.1.2.6 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PET | 0.65 | 53.0 | 4.25e-01 | 100.0% | 100.0% |
| 3514455 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.64 | 51.0 | 2.89e-01 | 100.0% | 21.9% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.63 | 43.0 | 2.75e-01 | 80.6% | 12.7% |
| 3993949 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.62 | 43.0 | 3.98e-01 | 74.2% | 51.1% |
| 4979651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 44.0 | 3.30e-01 | 74.2% | 25.6% |
| 3969016 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.62 | 46.0 | 2.86e-01 | 96.8% | 38.0% |
| 3996530 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.62 | 44.0 | 3.74e-01 | 83.9% | 41.5% |
| 3251044 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.61 | 46.0 | 3.01e-01 | 100.0% | 17.5% |
| 2089693 | 2492.1.1.13 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PROCT | 0.61 | 48.0 | 2.79e-01 | 100.0% | 9.9% |
| 3669809 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.60 | 47.0 | 3.29e-01 | 100.0% | 36.0% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 42.0 | 2.80e-01 | 83.9% | 83.1% |
| 4888882 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.59 | 43.0 | 2.70e-01 | 77.4% | 25.7% |
| None | — | 0.58 | 41.0 | 2.45e-01 | 100.0% | 8.6% | |
| 2446831 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 41.0 | 3.85e-01 | 74.2% | 50.0% |
| 4998031 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 45.0 | 2.95e-01 | 100.0% | 23.1% |
| 1247620 | 101.1.1.72 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GP3_package | 0.57 | 43.0 | 2.98e-01 | 100.0% | 49.6% |
| 3890507 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.56 | 45.0 | 2.73e-01 | 93.5% | 50.9% |
| 4983992 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.56 | 39.0 | 2.77e-01 | 100.0% | 31.6% |
| 2037626 | 808.1.1.1 ↗ | a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › CoV_nucleocap | 0.55 | 45.0 | 3.10e-01 | 71.0% | 19.5% |
| 4608174 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.54 | 38.0 | 2.98e-01 | 74.2% | 25.6% |
| 3825435 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.54 | 41.0 | 2.70e-01 | 90.3% | 15.8% |
| 1595160 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 2.58e-01 | 100.0% | 58.7% |
| 3559594 | 3256.1.1.0 ↗ | a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain | 0.51 | 36.0 | 3.48e-01 | 74.2% | 92.0% |
| 5049862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 2.57e-01 | 100.0% | 27.4% |