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IMGVR_UViG_3300025129_000580-3300025129-Ga0210027_1000086122
Arc-VirIMGVR_UViG_3300025129_000580-3300025129-Ga0210027_1000086122
Identity
- Kingdom:
- archaea
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qr4A02 | 1.10.287.830 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like | 0.63 | 35.0 | 4.06e-01 | 77.6% | 78.7% |
| 4xviA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 41.0 | 3.30e-01 | 71.6% | 50.7% |
| 3rk6A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 48.0 | 3.48e-01 | 92.5% | 37.3% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.61 | 42.0 | 3.83e-01 | 73.1% | 97.8% |
| 6ks6A02 | 3.30.260.10 | Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain | 0.60 | 44.0 | 3.84e-01 | 80.6% | 84.3% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.60 | 45.0 | 3.17e-01 | 82.1% | 52.5% |
| 3hwcA01 | 1.10.3140.10 | Mainly Alpha › Orthogonal Bundle › 4-hydroxybutyryl-coa dehydratase, domain 1 › 4-hydroxybutyryl-coa dehydratase, domain 1 | 0.59 | 45.0 | 3.62e-01 | 86.6% | 55.8% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 39.0 | 3.13e-01 | 70.1% | 56.2% |
| 2kfdA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.58 | 42.0 | 4.25e-01 | 79.1% | 95.4% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 3.25e-01 | 100.0% | 42.2% |
| 2l2oA00 | 1.10.10.1540 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain | 0.57 | 44.0 | 4.19e-01 | 88.1% | 87.1% |
| 7chiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 44.0 | 3.12e-01 | 85.1% | 64.4% |
| 3r84B00 | 6.10.280.160 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 | 0.56 | 38.0 | 3.59e-01 | 70.1% | 81.2% |
| 3sigA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.55 | 45.0 | 2.99e-01 | 89.6% | 24.5% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.17e-01 | 85.1% | 79.2% |
| 2lc0A00 | 3.30.2320.60 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › FhaA, phosphopeptide-binding domain (DUF3662) | 0.54 | 44.0 | 3.67e-01 | 95.5% | 81.1% |
| 1qoyA00 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.54 | 43.0 | 2.80e-01 | 88.1% | 93.7% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.54 | 38.0 | 3.56e-01 | 80.6% | 59.1% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.01e-01 | 77.6% | 63.8% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.11e-01 | 83.6% | 41.3% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 37.0 | 2.68e-01 | 79.1% | 87.1% |
| 4dsfA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.50 | 34.0 | 3.00e-01 | 71.6% | 60.0% |
| 3jw4A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.09e-01 | 88.1% | 43.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4375035 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.72 | 57.0 | 4.75e-01 | 83.6% | 79.1% |
| 5008705 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.72 | 55.0 | 4.54e-01 | 80.6% | 78.3% |
| 4927908 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.70 | 53.0 | 4.04e-01 | 80.6% | 88.0% |
| 4949080 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.69 | 53.0 | 3.34e-01 | 80.6% | 17.2% |
| 3806665 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.68 | 59.0 | 3.78e-01 | 100.0% | 34.3% |
| 4960253 | 2498.5.1.1 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 | 0.67 | 50.0 | 4.16e-01 | 79.1% | 73.0% |
| 3504598 | 109.4.1.72 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C | 0.67 | 51.0 | 3.21e-01 | 83.6% | 15.5% |
| 3691173 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.66 | 49.0 | 3.82e-01 | 79.1% | 90.3% |
| 4876668 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.66 | 44.0 | 3.64e-01 | 70.1% | 60.5% |
| 3446117 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.65 | 56.0 | 3.43e-01 | 100.0% | 26.8% |
| 3721737 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.62 | 53.0 | 4.26e-01 | 97.0% | 83.0% |
| 3903618 | 219.1.1.54 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 | 0.62 | 46.0 | 3.03e-01 | 80.6% | 73.1% |
| 3167770 | 109.4.1.269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3 | 0.62 | 51.0 | 2.99e-01 | 92.5% | 28.3% |
| 4605056 | 109.4.1.1352 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM, EFR3 | 0.62 | 53.0 | 3.68e-01 | 97.0% | 45.3% |
| 4528478 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.61 | 38.0 | 4.15e-01 | 73.1% | 78.2% |
| 4393385 | 1032.1.1.1 ↗ | alpha arrays › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › Toxin A (TcdA) helical domain › TcdA_TcdB_pore | 0.60 | 46.0 | 3.46e-01 | 85.1% | 60.0% |
| 3301914 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.60 | 46.0 | 3.37e-01 | 85.1% | 36.0% |
| 4995595 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.60 | 54.0 | 3.63e-01 | 100.0% | 47.0% |
| 3688023 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 51.0 | 2.89e-01 | 97.0% | 23.4% |
| 3201554 | 150.1.1.98 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint | 0.59 | 44.0 | 3.77e-01 | 85.1% | 72.5% |
| 3846614 | 109.4.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup192 | 0.58 | 49.0 | 2.65e-01 | 97.0% | 5.0% |
| 4405696 | 109.4.1.269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3 | 0.58 | 50.0 | 3.79e-01 | 98.5% | 69.4% |
| 3717906 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.57 | 48.0 | 3.47e-01 | 98.5% | 73.0% |
| 2601919 | 7529.1.1.5 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › PARG_cat_microb | 0.55 | 45.0 | 2.99e-01 | 89.6% | 24.5% |
| 3839545 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.54 | 47.0 | 2.94e-01 | 100.0% | 34.9% |
| 5012947 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.54 | 40.0 | 2.90e-01 | 83.6% | 50.7% |
| 3632380 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 45.0 | 3.18e-01 | 100.0% | 70.6% |
| 4533583 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 40.0 | 3.40e-01 | 83.6% | 73.0% |
| 3183367 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 43.0 | 2.92e-01 | 95.5% | 76.3% |
| 4022116 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.52 | 43.0 | 3.02e-01 | 100.0% | 62.6% |
| 3250585 | 109.4.1.791 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 | 0.51 | 39.0 | 2.36e-01 | 85.1% | 19.2% |
| 3932354 | 7023.1.1.1 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT | 0.51 | 36.0 | 2.82e-01 | 74.6% | 34.3% |
| 3182185 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.51 | 43.0 | 3.04e-01 | 100.0% | 67.3% |
| 3298137 | 2498.1.1.23 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 | 0.51 | 43.0 | 2.67e-01 | 100.0% | 73.5% |
| 1385096 | 633.6.1.3 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › HpaB | 0.50 | 43.0 | 3.07e-01 | 100.0% | 49.5% |