←Back to structures
IMGVR_UViG_3300025131_000516-3300025131-Ga0209128_100090123
Arc-VirIMGVR_UViG_3300025131_000516-3300025131-Ga0209128_100090123
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-69_86-99
Domain cluster:
rep: IMGVR_UViG_3300026210_000026-3300026210-Ga0208642_10007651__D14-80
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 44.0 | 3.98e-01 | 72.3% | 86.0% |
| 3p96A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 42.0 | 4.24e-01 | 72.3% | 83.3% |
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 42.0 | 4.22e-01 | 72.3% | 80.0% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.59 | 43.0 | 2.65e-01 | 77.1% | 49.0% |
| 2ebeA00 | 3.30.70.2290 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF3208) | 0.55 | 39.0 | 3.59e-01 | 74.7% | 84.0% |
| 1vw4K00 | 3.90.1170.10 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 | 0.53 | 40.0 | 3.13e-01 | 83.1% | 65.1% |
| 1yhqH00 | 3.90.1170.10 | Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Ribosomal protein L16/L10 | 0.52 | 37.0 | 3.10e-01 | 75.9% | 61.9% |
| 2asyA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.31e-01 | 72.3% | 70.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173339 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 44.0 | 4.37e-01 | 72.3% | 81.2% |
| 4932698 | 325.1.5.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 | 0.59 | 41.0 | 3.18e-01 | 73.5% | 62.6% |
| 4031401 | 304.28.1.13 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › MMPL | 0.58 | 40.0 | 3.65e-01 | 71.1% | 79.1% |
| 5069016 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.57 | 41.0 | 3.65e-01 | 74.7% | 92.5% |
| 5000844 | 325.1.5.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 | 0.55 | 38.0 | 3.19e-01 | 72.3% | 76.6% |
| 3215917 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 46.0 | 3.27e-01 | 95.2% | 40.0% |
| 3182272 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.54 | 36.0 | 2.72e-01 | 71.1% | 58.7% |
| 5078107 | 325.1.5.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal protein L10e › Ribosomal_L16 | 0.53 | 37.0 | 3.11e-01 | 72.3% | 77.9% |
| 5070107 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.53 | 36.0 | 3.91e-01 | 72.3% | 87.1% |
| 5027283 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.76e-01 | 80.7% | 96.8% |
| 3392977 | 304.55.2.9 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › DUF4780 | 0.52 | 36.0 | 3.58e-01 | 74.7% | 80.0% |
| 3795605 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.51 | 43.0 | 3.41e-01 | 95.2% | 58.9% |
| 4592983 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.51 | 41.0 | 3.38e-01 | 92.8% | 49.1% |
D2
medium
residues 70-85_100-210
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1quuA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 45.0 | 4.61e-01 | 92.1% | 70.6% |
| 6q45G01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.62 | 43.0 | 4.17e-01 | 71.7% | 69.2% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.62 | 44.0 | 4.58e-01 | 90.6% | 79.0% |
| 1hx8A02 | 1.20.58.150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › ANTH domain | 0.61 | 40.0 | 4.15e-01 | 89.0% | 70.9% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.59 | 37.0 | 4.44e-01 | 70.9% | 96.3% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.59 | 41.0 | 4.21e-01 | 93.7% | 75.6% |
| 4lunU00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 46.0 | 3.44e-01 | 82.7% | 52.1% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 40.0 | 4.07e-01 | 100.0% | 73.4% |
| 6h2dS01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.56 | 48.0 | 3.98e-01 | 91.3% | 71.3% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 36.0 | 3.24e-01 | 100.0% | 46.9% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 39.0 | 3.06e-01 | 70.1% | 35.9% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 40.0 | 4.30e-01 | 98.4% | 87.2% |
| 2pihA00 | 1.20.1500.10 | Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like | 0.56 | 39.0 | 3.94e-01 | 70.9% | 78.9% |
| 5azpB01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.55 | 42.0 | 3.10e-01 | 81.9% | 84.3% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 34.0 | 3.62e-01 | 86.6% | 71.7% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.52 | 38.0 | 3.36e-01 | 73.2% | 75.1% |
| 7lb8B02 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.52 | 43.0 | 3.30e-01 | 90.6% | 69.7% |
| 1n40A00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 39.0 | 2.75e-01 | 78.7% | 67.0% |
| 1oe8A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 32.0 | 3.27e-01 | 92.1% | 62.1% |
| 3x0uB01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.51 | 42.0 | 3.44e-01 | 89.0% | 92.6% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 34.0 | 3.06e-01 | 100.0% | 48.6% |
| 1u7lA02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.51 | 43.0 | 3.80e-01 | 91.3% | 65.0% |
| 1ldjA01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 31.0 | 3.20e-01 | 94.5% | 61.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3194355 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.66 | 54.0 | 3.54e-01 | 87.4% | 83.8% |
| 3506760 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 45.0 | 4.50e-01 | 70.1% | 93.1% |
| 4354474 | 101.1.2.598 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD | 0.64 | 53.0 | 3.62e-01 | 89.0% | 98.7% |
| 3209229 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.64 | 50.0 | 4.00e-01 | 83.5% | 52.9% |
| 3760768 | 148.1.3.248 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KIF21A | 0.64 | 44.0 | 4.06e-01 | 70.1% | 58.1% |
| 3235363 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.64 | 43.0 | 3.53e-01 | 70.9% | 39.1% |
| 3481541 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.64 | 44.0 | 4.88e-01 | 70.1% | 89.0% |
| 4516988 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.63 | 43.0 | 4.20e-01 | 70.1% | 70.0% |
| 3694833 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 45.0 | 4.48e-01 | 73.2% | 76.2% |
| 3611700 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.63 | 43.0 | 3.29e-01 | 70.9% | 32.3% |
| 3472826 | 192.2.1.36 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Gpi1 | 0.63 | 42.0 | 3.62e-01 | 75.6% | 42.4% |
| 3592587 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.62 | 48.0 | 4.85e-01 | 81.1% | 89.6% |
| 3615967 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 43.0 | 4.07e-01 | 70.9% | 68.0% |
| 4086306 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 47.0 | 3.91e-01 | 81.1% | 93.8% |
| 3691415 | 2004.1.1.748 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_23, SbcC_Walker_B | 0.60 | 44.0 | 2.83e-01 | 74.0% | 35.6% |
| 4116038 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.60 | 42.0 | 3.99e-01 | 73.2% | 65.8% |
| 4016292 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.59 | 42.0 | 4.11e-01 | 71.7% | 71.1% |
| 4993210 | 3755.3.1.635 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PHA_synth_III_E | 0.58 | 41.0 | 3.68e-01 | 73.2% | 63.8% |
| 4109644 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 50.0 | 4.86e-01 | 96.9% | 97.2% |
| 4645599 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 45.0 | 3.28e-01 | 82.7% | 98.0% |
| 3855782 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.57 | 44.0 | 4.52e-01 | 100.0% | 86.7% |
| 3386594 | 3291.1.1.197 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › MCPsignal | 0.55 | 39.0 | 4.20e-01 | 72.4% | 92.4% |
| 3591298 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 42.0 | 3.74e-01 | 81.1% | 60.0% |
| 5032512 | 5086.1.1.234 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › CdvA | 0.54 | 46.0 | 4.51e-01 | 92.9% | 98.5% |
| 3901313 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 34.0 | 3.14e-01 | 74.0% | 51.2% |
| 4995732 | 604.32.1.0 ↗ | alpha bundles › Spectrin repeat-like › Recombination protein uvsY › Recombination protein uvsY | 0.51 | 43.0 | 4.20e-01 | 93.7% | 88.6% |
| 1841134 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.51 | 43.0 | 2.97e-01 | 92.9% | 91.7% |