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IMGVR_UViG_3300025131_000516-3300025131-Ga0209128_10009018

Arc-Vir

IMGVR_UViG_3300025131_000516-3300025131-Ga0209128_10009018

Quality

85.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 180-257
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.69 45.0 4.98e-01 100.0% 85.2%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.68 58.0 3.73e-01 96.2% 21.3%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 57.0 5.07e-01 98.7% 90.9%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 45.0 4.91e-01 80.8% 91.9%
2p4vA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.65 41.0 4.24e-01 94.9% 67.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 41.0 3.72e-01 98.7% 47.2%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.64 50.0 3.78e-01 85.9% 36.8%
1m6nA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.63 44.0 3.65e-01 97.4% 42.2%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 42.0 4.20e-01 73.1% 67.9%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.63 45.0 4.47e-01 76.9% 72.8%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.63 51.0 4.18e-01 92.3% 80.5%
6nmnA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 40.0 3.45e-01 100.0% 40.6%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.62 38.0 4.27e-01 100.0% 87.3%
1wa5C00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 45.0 2.54e-01 79.5% 12.6%
6t4hA03 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.60 42.0 3.32e-01 74.4% 75.0%
3f5cB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.60 48.0 3.70e-01 88.5% 62.3%
3p0uA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.60 49.0 3.62e-01 92.3% 68.9%
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.60 44.0 3.92e-01 92.3% 53.9%
1w1oA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.59 50.0 3.64e-01 94.9% 36.0%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.59 43.0 4.24e-01 79.5% 84.1%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 40.0 4.09e-01 76.9% 71.8%
1lwbA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.59 44.0 3.94e-01 83.3% 65.6%
2ipcA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.59 43.0 3.10e-01 78.2% 53.3%
6hwjA01 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.58 48.0 3.41e-01 89.7% 80.0%
2cufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 40.0 4.12e-01 71.8% 76.4%
2iusA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 43.0 2.88e-01 78.2% 66.0%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.58 44.0 4.39e-01 83.3% 100.0%
4xaiB02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 46.0 3.50e-01 88.5% 64.8%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.57 48.0 4.78e-01 96.2% 98.8%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.57 39.0 3.62e-01 70.5% 59.0%
1jt6A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 42.0 3.54e-01 79.5% 59.9%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.57 42.0 4.04e-01 78.2% 85.4%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 46.0 3.42e-01 89.7% 42.5%
4nufA02 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 49.0 3.80e-01 100.0% 65.4%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 40.0 3.93e-01 76.9% 95.3%
3no6A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.55 47.0 3.44e-01 100.0% 80.9%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 36.0 3.87e-01 88.5% 84.1%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.54 42.0 4.31e-01 100.0% 89.2%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.52 44.0 3.93e-01 93.6% 65.5%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 36.0 3.86e-01 83.3% 82.4%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 4.00e-01 98.7% 95.4%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.30e-01 100.0% 41.7%
1ohuA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 45.0 3.58e-01 100.0% 81.2%
2hytA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 2.91e-01 79.5% 39.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4331401 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.69 57.0 3.52e-01 94.9% 28.6%
4927391 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.68 54.0 5.67e-01 87.2% 100.0%
4273757 148.1.3.257 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF494 0.67 52.0 4.96e-01 83.3% 77.8%
4419510 604.12.1.3 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Thia_YuaJ 0.66 56.0 4.28e-01 94.9% 82.1%
3924569 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 51.0 4.26e-01 96.2% 47.9%
4009705 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.64 44.0 4.82e-01 80.8% 93.3%
3998768 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.64 53.0 3.82e-01 96.2% 80.0%
3639945 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.61 50.0 3.62e-01 92.3% 47.5%
4984123 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.61 46.0 3.53e-01 80.8% 36.1%
3215885 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.61 50.0 3.63e-01 96.2% 75.5%
4006612 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.61 49.0 4.85e-01 91.0% 87.1%
3222651 188.1.1.0 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain 0.60 44.0 3.24e-01 79.5% 57.4%
3580853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.48e-01 71.8% 86.2%
3687243 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 46.0 4.78e-01 87.2% 92.9%
3925011 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.60 50.0 3.57e-01 98.7% 77.8%
4387678 109.49.1.1 alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central 0.59 50.0 3.62e-01 98.7% 34.4%
3455585 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.59 47.0 4.38e-01 88.5% 88.0%
3403493 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.59 48.0 3.51e-01 94.9% 76.7%
4016179 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.59 51.0 4.43e-01 100.0% 82.4%
4991684 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.58 51.0 3.56e-01 100.0% 34.9%
4374802 639.2.1.2 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 0.58 41.0 4.38e-01 75.6% 89.2%
3289114 148.1.3.251 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 0.58 46.0 4.81e-01 87.2% 100.0%
4331100 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 42.0 3.95e-01 76.9% 86.3%
4056158 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.57 41.0 3.72e-01 76.9% 74.5%
3280651 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 41.0 3.03e-01 80.8% 50.4%
3684484 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.56 40.0 3.13e-01 76.9% 66.1%
3727500 604.12.1.2 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.55 40.0 4.20e-01 79.5% 100.0%
3702954 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 42.0 4.42e-01 92.3% 97.1%
4938198 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.53 44.0 4.23e-01 93.6% 82.2%
3296508 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 42.0 3.68e-01 87.2% 89.4%
4970913 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 43.0 3.28e-01 94.9% 68.7%
3713961 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 45.0 4.12e-01 97.4% 72.4%
5053145 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 40.0 4.23e-01 94.9% 91.4%
3958924 4033.1.1.0 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.51 33.0 3.20e-01 78.2% 56.7%
4439831 2004.1.1.193 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_19 0.51 40.0 2.81e-01 88.5% 34.9%
3346290 109.4.1.1258 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.50 45.0 3.04e-01 97.4% 28.5%
3584418 109.4.1.390 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TH1 0.50 42.0 3.01e-01 94.9% 33.9%
D2 medium residues 1-164
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06067.17 best DUF932 47.6 2.50e-12 67.1% 42.3%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.57 34.0 4.08e-01 93.9% 93.9%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 34.0 3.38e-01 84.8% 62.4%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 28.0 3.48e-01 81.7% 90.5%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941745 241.15.1.4 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › DUF932 0.69 54.0 5.77e-01 100.0% 91.7%
4976136 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.67 35.0 4.54e-01 70.1% 87.4%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.66 43.0 5.09e-01 95.7% 96.4%
3694785 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.57 43.0 4.01e-01 100.0% 60.9%
3596328 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 38.0 3.82e-01 70.1% 90.6%
3493866 216.1.1.26 a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 0.55 35.0 4.15e-01 95.1% 98.1%
3402209 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 28.0 3.76e-01 85.4% 95.3%
3583444 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.53 30.0 3.58e-01 92.7% 80.0%
4968742 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.53 37.0 3.91e-01 70.7% 93.8%
3515197 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.52 39.0 3.94e-01 98.8% 75.9%
3701306 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 40.0 3.69e-01 79.9% 95.2%
3666444 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 36.0 3.51e-01 70.1% 81.1%
3544803 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.51 36.0 3.40e-01 70.1% 75.9%
3507449 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.51 35.0 3.34e-01 70.7% 72.2%
3593049 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 39.0 3.59e-01 79.9% 95.2%