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IMGVR_UViG_3300025131_000516-3300025131-Ga0209128_10009019

Arc-Vir

IMGVR_UViG_3300025131_000516-3300025131-Ga0209128_10009019

Identity

Kingdom:
archaea

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-126
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 44.0 4.90e-01 79.8% 98.6%
2qz4A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 42.0 4.78e-01 80.8% 97.1%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.62 44.0 3.95e-01 74.7% 63.9%
1vj7B01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.60 47.0 3.93e-01 84.8% 78.0%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.59 36.0 4.04e-01 78.8% 81.1%
2lm4A01 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.56 42.0 4.31e-01 81.8% 83.7%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 31.0 3.12e-01 86.9% 51.5%
1z72A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.54 40.0 3.12e-01 77.8% 77.3%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 45.0 3.71e-01 93.9% 91.7%
4p17A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.54 43.0 4.23e-01 89.9% 80.0%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 38.0 3.77e-01 74.7% 94.3%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.50 35.0 3.76e-01 71.7% 92.8%
1t9xA05 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.50 42.0 3.37e-01 97.0% 68.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935496 101.1.10.9 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.68 55.0 4.45e-01 84.8% 48.3%
4648750 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.68 53.0 4.04e-01 82.8% 85.2%
3385104 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 48.0 5.25e-01 83.8% 95.0%
3596625 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 45.0 5.16e-01 82.8% 100.0%
5016368 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.65 50.0 4.00e-01 82.8% 88.7%
4003682 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 45.0 5.05e-01 82.8% 96.0%
3953437 3317.1.1.0 ↗ alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.62 49.0 4.70e-01 90.9% 72.5%
4975476 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 44.0 3.91e-01 76.8% 71.3%
3953159 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 48.0 4.46e-01 87.9% 68.5%
4003422 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.60 44.0 3.73e-01 75.8% 63.0%
3702571 103.1.1.103 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF29442 0.60 42.0 4.28e-01 88.9% 74.7%
3274314 544.1.1.0 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.59 44.0 4.27e-01 78.8% 70.9%
4248772 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.57 41.0 3.33e-01 74.7% 70.8%
4040119 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 40.0 4.44e-01 80.8% 98.7%
3708729 5050.1.1.39 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PGAP2IP_TM_2nd 0.56 40.0 3.25e-01 74.7% 50.3%
4484919 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.55 32.0 3.41e-01 83.8% 64.4%
5046861 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.53 36.0 3.05e-01 82.8% 42.9%
3240618 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 40.0 3.54e-01 83.8% 74.0%
4086402 632.22.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.51 33.0 3.58e-01 85.9% 76.5%