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IMGVR_UViG_3300025131_000548-3300025131-Ga0209128_100095111
Arc-VirIMGVR_UViG_3300025131_000548-3300025131-Ga0209128_100095111
Identity
- Kingdom:
- archaea
Quality
81.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-71
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.64 | 47.0 | 3.97e-01 | 79.1% | 60.3% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 51.0 | 4.34e-01 | 91.0% | 76.3% |
| 2gd5A00 | 6.10.140.1230 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 46.0 | 3.64e-01 | 77.6% | 80.3% |
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 45.0 | 4.05e-01 | 85.1% | 78.0% |
| 1q59A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.58 | 45.0 | 3.47e-01 | 89.6% | 84.3% |
| 1vq8P03 | 1.10.1200.60 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.55 | 41.0 | 4.35e-01 | 100.0% | 96.4% |
| 3aleA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 39.0 | 3.10e-01 | 77.6% | 51.7% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 41.0 | 3.54e-01 | 92.5% | 52.4% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.54 | 39.0 | 3.35e-01 | 80.6% | 84.9% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.53 | 40.0 | 4.03e-01 | 97.0% | 83.6% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 46.0 | 4.25e-01 | 97.0% | 87.4% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.52 | 41.0 | 3.44e-01 | 89.6% | 52.4% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.52 | 41.0 | 3.90e-01 | 94.0% | 75.9% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.52 | 39.0 | 3.52e-01 | 89.6% | 87.7% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.51 | 36.0 | 3.39e-01 | 77.6% | 73.0% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 42.0 | 4.10e-01 | 98.5% | 92.0% |
| 2c61A00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 43.0 | 2.67e-01 | 100.0% | 62.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1839916 | 601.7.1.13 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › YgxA-like_sub_bind | 0.64 | 51.0 | 4.45e-01 | 91.0% | 82.6% |
| 3242356 | 605.4.1.19 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF30187 | 0.63 | 46.0 | 4.22e-01 | 77.6% | 92.2% |
| 3249156 | 2498.4.1.1 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 | 0.60 | 44.0 | 3.43e-01 | 77.6% | 71.7% |
| 5061328 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.59 | 42.0 | 4.21e-01 | 76.1% | 85.7% |
| 4297295 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.57 | 43.0 | 4.17e-01 | 83.6% | 84.0% |
| 3478946 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.54 | 41.0 | 3.78e-01 | 89.6% | 81.0% |
| 3928004 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 42.0 | 3.88e-01 | 88.1% | 88.9% |
| 4992926 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.54 | 34.0 | 3.38e-01 | 91.0% | 57.3% |
| 4949979 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.51 | 34.0 | 3.45e-01 | 82.1% | 67.7% |
| 3239857 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.50 | 43.0 | 3.89e-01 | 100.0% | 80.0% |