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IMGVR_UViG_3300025145_000083-3300025145-Ga0209609_100013563
Arc-VirIMGVR_UViG_3300025145_000083-3300025145-Ga0209609_100013563
Identity
- Kingdom:
- archaea
Quality
86.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-270
Domain cluster:
rep: IMGVR_UViG_3300010263_000154-3300010263-Ga0134105_1000027134__D157-384
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00882.25 best | Zn_dep_PLPC | 33.3 | 6.30e-08 | 87.3% | 74.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.79 | 77.0 | 7.32e-01 | 100.0% | 94.8% |
| 1ah7A00 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.79 | 76.0 | 7.31e-01 | 100.0% | 95.1% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.64 | 28.0 | 3.90e-01 | 72.9% | 78.2% |
| 6axfA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.62 | 26.0 | 3.56e-01 | 87.3% | 71.8% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 28.0 | 4.16e-01 | 75.1% | 96.1% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.61 | 28.0 | 3.79e-01 | 73.3% | 81.4% |
| 2af7D00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 25.0 | 3.41e-01 | 86.0% | 76.9% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.55 | 32.0 | 4.14e-01 | 89.6% | 100.0% |
| 3dzaA01 | 1.20.120.1940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain | 0.55 | 27.0 | 3.71e-01 | 77.8% | 89.7% |
| 1ileA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.54 | 31.0 | 3.38e-01 | 90.0% | 63.4% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.52 | 32.0 | 3.85e-01 | 92.3% | 90.1% |
| 1h6gA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 28.0 | 3.73e-01 | 90.0% | 99.2% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5047664 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.90 | 79.0 | 8.15e-01 | 100.0% | 94.8% |
| 4943454 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.87 | 77.0 | 8.00e-01 | 100.0% | 97.6% |
| 5064562 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.84 | 82.0 | 7.32e-01 | 100.0% | 96.2% |
| 5020893 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.84 | 74.0 | 7.83e-01 | 96.8% | 100.0% |
| 4948948 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.82 | 72.0 | 7.60e-01 | 96.8% | 100.0% |
| 5018311 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.82 | 74.0 | 7.24e-01 | 96.8% | 87.6% |
| 4951434 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.80 | 76.0 | 7.40e-01 | 98.2% | 95.0% |
| 4366904 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.80 | 77.0 | 7.33e-01 | 100.0% | 94.8% |
| 4133 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.79 | 76.0 | 7.31e-01 | 100.0% | 95.1% |
| 4605911 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.79 | 75.0 | 7.30e-01 | 99.5% | 94.6% |
| 5014001 | 177.1.1.1 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Zn_dep_PLPC | 0.78 | 76.0 | 7.27e-01 | 100.0% | 98.0% |
| 3973959 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.77 | 72.0 | 7.02e-01 | 98.2% | 100.0% |
| 3891620 | 177.1.1.3 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › VWA7_N | 0.57 | 54.0 | 5.02e-01 | 100.0% | 92.2% |
| 3903894 | 177.1.1.3 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › VWA7_N | 0.57 | 54.0 | 4.98e-01 | 100.0% | 94.2% |
| 3716232 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.56 | 29.0 | 3.51e-01 | 77.4% | 72.0% |
| 5030837 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 33.0 | 4.11e-01 | 100.0% | 97.6% |
| 3900317 | 177.1.1.3 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › VWA7_N | 0.56 | 48.0 | 4.99e-01 | 95.9% | 96.1% |
| 3245201 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.54 | 28.0 | 3.44e-01 | 81.9% | 76.4% |
| 3193077 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.53 | 44.0 | 3.35e-01 | 88.2% | 68.8% |
| 4142528 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.52 | 32.0 | 3.28e-01 | 92.8% | 59.8% |
| 4579385 | 140.1.1.5 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 | 0.52 | 30.0 | 3.15e-01 | 91.4% | 60.0% |
| 5037181 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.51 | 36.0 | 3.90e-01 | 75.6% | 87.8% |
| 3253214 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.50 | 33.0 | 3.37e-01 | 92.8% | 65.9% |
| 4000508 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.50 | 32.0 | 3.10e-01 | 83.7% | 55.2% |