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IMGVR_UViG_3300025146_000281-3300025146-Ga0209322_100037677
Arc-VirIMGVR_UViG_3300025146_000281-3300025146-Ga0209322_100037677
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-43_74-132_266-287
Domain cluster:
rep: IMGVR_UViG_3300002120_000098-3300002120-C687J26616_100029157__D29-50_74-150_259-304
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e0zA01 | 3.30.2400.20 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › | 0.80 | 66.0 | 6.98e-01 | 95.8% | 96.3% |
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 33.0 | 3.34e-01 | 71.4% | 53.4% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.59 | 41.0 | 3.89e-01 | 99.2% | 60.0% |
| 3zxoA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.56 | 36.0 | 3.63e-01 | 97.5% | 61.6% |
| 7n0eB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.56 | 39.0 | 3.92e-01 | 98.3% | 70.5% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.53 | 39.0 | 3.72e-01 | 77.3% | 79.0% |
| 3ocjA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 38.0 | 2.88e-01 | 75.6% | 71.7% |
| 2gukA00 | 3.30.2190.10 | Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like | 0.51 | 26.0 | 2.70e-01 | 84.9% | 48.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.87 | 82.0 | 5.70e-01 | 100.0% | 79.6% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.82 | 75.0 | 5.74e-01 | 97.5% | 93.3% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.75 | 66.0 | 4.90e-01 | 92.4% | 93.5% |
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.73 | 66.0 | 4.94e-01 | 100.0% | 93.9% |
| 3482574 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.63 | 45.0 | 4.67e-01 | 79.0% | 78.1% |
| 3513756 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.63 | 44.0 | 4.92e-01 | 78.2% | 91.6% |
| 3498135 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.62 | 45.0 | 4.79e-01 | 79.8% | 84.8% |
| 3706258 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.62 | 45.0 | 4.43e-01 | 79.0% | 71.2% |
| 5012996 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.61 | 52.0 | 5.31e-01 | 100.0% | 96.5% |
| 3247018 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.60 | 45.0 | 4.69e-01 | 79.0% | 95.5% |
| 3283943 | 304.8.1.80 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF6196 | 0.59 | 30.0 | 3.75e-01 | 70.6% | 81.4% |
| 4027296 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.57 | 42.0 | 4.46e-01 | 81.5% | 86.7% |
| 5082343 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 41.0 | 3.34e-01 | 82.4% | 87.8% |
| 3733325 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.53 | 46.0 | 4.30e-01 | 96.6% | 90.1% |
| 5010188 | 328.5.1.0 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like | 0.52 | 25.0 | 3.13e-01 | 87.4% | 74.3% |
| 3588651 | 225.1.1.9 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_5 | 0.52 | 35.0 | 3.30e-01 | 96.6% | 54.7% |
| 3290229 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.52 | 33.0 | 3.24e-01 | 91.6% | 56.7% |
| 3273660 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.51 | 45.0 | 3.86e-01 | 95.8% | 93.2% |
| 5620 | 320.3.1.1 ↗ | a+b two layers › R3H domain-like › PG1857-like › PG1857-like › DUF2023 | 0.51 | 26.0 | 2.70e-01 | 84.9% | 48.6% |
D2
high
residues 139-258_296-301
Domain cluster:
rep: MG711462.1__AUV56456.1__X__00039__D356-478_508-525
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.71 | 52.0 | 5.85e-01 | 94.4% | 99.0% |
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.71 | 50.0 | 5.80e-01 | 81.7% | 98.9% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.66 | 48.0 | 5.35e-01 | 100.0% | 98.9% |
| 4mnnA00 | 3.40.30.80 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.65 | 31.0 | 2.81e-01 | 75.4% | 34.5% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.63 | 48.0 | 5.22e-01 | 94.4% | 96.2% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.57 | 36.0 | 3.45e-01 | 77.8% | 53.7% |
| 3a32A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 50.0 | 3.75e-01 | 98.4% | 84.3% |
| 3v3tA02 | 3.30.1330.150 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.55 | 33.0 | 3.71e-01 | 75.4% | 76.8% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.55 | 47.0 | 4.78e-01 | 94.4% | 95.0% |
| 3ef4A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 34.0 | 3.50e-01 | 91.3% | 65.3% |
| 4v1ag00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 34.0 | 3.26e-01 | 91.3% | 56.8% |
| 2i6dA01 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 34.0 | 3.78e-01 | 95.2% | 88.3% |
| 4v1ap00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 31.0 | 3.48e-01 | 75.4% | 77.3% |
| 5hp5A01 | 2.60.40.1860 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain | 0.51 | 39.0 | 3.90e-01 | 92.1% | 80.2% |
| 1kdjA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 36.0 | 3.92e-01 | 89.7% | 91.2% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.85e-01 | 88.1% | 87.7% |
| 1byoA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 35.0 | 3.82e-01 | 89.7% | 89.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.91 | 88.0 | 6.36e-01 | 100.0% | 56.1% |
| 3164700 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.89 | 72.0 | 5.33e-01 | 83.3% | 63.6% |
| 5081455 | 2485.3.1.15 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT | 0.87 | 84.0 | 6.09e-01 | 100.0% | 49.3% |
| 3977985 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.81 | 77.0 | 5.41e-01 | 100.0% | 46.3% |
| 3975504 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.80 | 41.0 | 5.01e-01 | 78.6% | 75.3% |
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.77 | 43.0 | 5.12e-01 | 78.6% | 81.2% |
| 4097188 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.67 | 43.0 | 4.59e-01 | 81.0% | 73.6% |
| 4873245 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.65 | 50.0 | 5.02e-01 | 79.4% | 99.2% |
| 3728521 | 298.3.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C | 0.64 | 49.0 | 4.92e-01 | 78.6% | 97.6% |
| 3694446 | 298.3.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › MmgE_PrpD_C | 0.63 | 48.0 | 4.63e-01 | 80.2% | 91.7% |
| 4412841 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.63 | 41.0 | 4.06e-01 | 80.2% | 61.5% |
| 4942973 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.61 | 39.0 | 3.45e-01 | 80.2% | 43.9% |
| 4099448 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.61 | 36.0 | 3.98e-01 | 79.4% | 72.0% |
| 4683009 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.61 | 46.0 | 4.43e-01 | 77.8% | 83.6% |
| 4265507 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.26e-01 | 77.8% | 80.0% |
| 5083051 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.60 | 56.0 | 4.22e-01 | 100.0% | 55.9% |
| 3501742 | 2485.3.1.21 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP | 0.60 | 55.0 | 4.10e-01 | 100.0% | 57.1% |
| 4183870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.25e-01 | 77.8% | 78.7% |
| 3387325 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.60 | 37.0 | 3.36e-01 | 80.2% | 44.0% |
| 4309192 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.19e-01 | 77.8% | 75.5% |
| 4408770 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.22e-01 | 77.8% | 76.7% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.60 | 55.0 | 4.40e-01 | 98.4% | 85.9% |
| 4263687 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.22e-01 | 77.8% | 79.3% |
| 4275987 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 45.0 | 4.40e-01 | 77.8% | 85.9% |
| 2841509 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.59 | 54.0 | 4.10e-01 | 100.0% | 56.1% |
| 3311849 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.58 | 32.0 | 3.41e-01 | 72.2% | 59.1% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.56 | 52.0 | 3.88e-01 | 100.0% | 51.3% |
| 4030171 | 2485.1.1.123 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › PF26962 | 0.56 | 31.0 | 3.48e-01 | 72.2% | 69.0% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.55 | 50.0 | 3.87e-01 | 99.2% | 81.8% |
| 3792194 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 33.0 | 3.05e-01 | 75.4% | 45.6% |
| 4079005 | 298.4.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL | 0.55 | 43.0 | 4.36e-01 | 96.8% | 82.4% |
| 3618941 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.55 | 32.0 | 3.03e-01 | 75.4% | 45.6% |
| 3573670 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.54 | 33.0 | 3.73e-01 | 76.2% | 78.9% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.54 | 49.0 | 3.61e-01 | 99.2% | 81.1% |
| 3408007 | 2485.1.1.35 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › MRP_L53 | 0.54 | 34.0 | 3.65e-01 | 76.2% | 72.7% |
| 4980381 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 33.0 | 3.85e-01 | 92.1% | 95.3% |
| 1777 | 3156.1.1.3 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind | 0.50 | 36.0 | 3.92e-01 | 89.7% | 91.2% |