IMGVR_UViG_3300025146_000395-3300025146-Ga0209322_1000275521

Arc-Vir

Identity

76.2 mean pLDDT

View cluster (51 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41_139-158_179-320

PDB

Domain cluster: rep: MF497422.1__ATB52645.1__PVS_09__00009__D1-21_147-269_281-352

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23899.2 best	SU10_portal	31.4	1.00e-07	98.0%	29.0%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3mg1B02	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.59	27.0	3.46e-01	95.1%	70.4%
2gtlO02	2.40.128.620	Mainly Beta › Beta Barrel › Lipocalin ›	0.53	30.0	3.40e-01	96.1%	69.3%
2kxgA00	3.10.450.10	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.53	24.0	3.54e-01	75.9%	93.7%
4kcaA03	2.40.128.10	Mainly Beta › Beta Barrel › Lipocalin ›	0.51	23.0	3.21e-01	86.2%	86.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4891117	4038.1.1.11 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal	0.72	66.0	4.63e-01	96.1%	60.0%
4092770	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.55	20.0	2.68e-01	100.0%	58.0%
3096198	3692.1.1.0 ↗	a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain	0.51	27.0	3.55e-01	97.0%	93.5%

D2 medium residues 42-138_321-361_412-438_454-519

PDB

Domain cluster: rep: IMGVR_UViG_3300009548_000051-3300009548-Ga0116107_100150510__D56-158_348-396_436-459_480-556

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1k8kA04	3.90.640.10	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4	0.58	20.0	3.13e-01	75.8%	73.9%
3l9fA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	16.0	2.54e-01	71.4%	57.3%
4wk5A00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.58	31.0	3.00e-01	81.8%	44.9%
3wkmB01	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.55	25.0	3.62e-01	84.0%	97.9%
6iccA02	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.54	23.0	3.49e-01	80.5%	100.0%
2y8tA03	2.10.70.70	Mainly Beta › Ribbon › Complement Module; domain 1 ›	0.53	12.0	2.40e-01	74.9%	69.1%
2dqlA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	21.0	2.91e-01	76.2%	69.6%
2uxwA04	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	27.0	3.45e-01	75.3%	84.6%
2kjkA00	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.52	23.0	3.26e-01	79.7%	88.0%
7w6yA02	2.30.42.10	Mainly Beta › Roll › Pdz3 Domain › PDZ domain	0.52	21.0	3.26e-01	76.6%	98.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4891117	4038.1.1.11 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › SU10_portal	0.85	82.0	5.91e-01	100.0%	89.2%
5083493	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.76	73.0	6.31e-01	100.0%	86.0%
3494759	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	19.0	2.63e-01	71.4%	60.0%

D3 medium residues 597-675

PDB