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IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_100001665
Arc-VirIMGVR_UViG_3300025156_000428-3300025156-Ga0209834_100001665
Identity
- Kingdom:
- archaea
Quality
85.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-75
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.77 | 54.0 | 3.78e-01 | 71.9% | 60.8% |
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 55.0 | 3.82e-01 | 75.0% | 25.0% |
| 4gczA03 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.76 | 54.0 | 5.37e-01 | 75.0% | 80.0% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.72 | 55.0 | 5.04e-01 | 82.8% | 89.4% |
| 1dn1B00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 61.0 | 4.22e-01 | 96.9% | 52.3% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.70 | 50.0 | 3.93e-01 | 76.6% | 34.8% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.70 | 49.0 | 4.65e-01 | 98.4% | 61.8% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 49.0 | 4.26e-01 | 73.4% | 56.8% |
| 1k90B03 | 1.20.140.60 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.68 | 48.0 | 3.96e-01 | 75.0% | 71.3% |
| 4o5fA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.66 | 55.0 | 4.33e-01 | 95.3% | 45.7% |
| 7s3lA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.65 | 52.0 | 3.83e-01 | 87.5% | 58.2% |
| 2i39B00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.65 | 47.0 | 3.86e-01 | 78.1% | 48.7% |
| 4rgbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 52.0 | 3.47e-01 | 93.8% | 29.2% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 50.0 | 3.79e-01 | 87.5% | 98.6% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 52.0 | 4.15e-01 | 89.1% | 77.4% |
| 3crmA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.61 | 46.0 | 4.12e-01 | 78.1% | 60.7% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.61 | 49.0 | 3.66e-01 | 90.6% | 36.1% |
| 1xg5B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 50.0 | 3.41e-01 | 93.8% | 35.7% |
| 6nbrC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 47.0 | 3.01e-01 | 85.9% | 30.6% |
| 1w36F02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 44.0 | 3.84e-01 | 81.2% | 72.0% |
| 1b10A00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.58 | 50.0 | 4.29e-01 | 96.9% | 81.7% |
| 3iu6A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 44.0 | 3.52e-01 | 87.5% | 60.1% |
| 5h9fB00 | 1.10.520.40 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 | 0.55 | 42.0 | 3.27e-01 | 84.4% | 76.5% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 45.0 | 3.97e-01 | 89.1% | 97.8% |
| 3ef4A00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 37.0 | 3.12e-01 | 75.0% | 87.9% |
| 3ju1B00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.51 | 42.0 | 2.72e-01 | 96.9% | 34.2% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 39.0 | 2.83e-01 | 87.5% | 65.1% |
| 2xvlA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 41.0 | 2.67e-01 | 98.4% | 75.6% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3620861 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.85 | 61.0 | 4.67e-01 | 75.0% | 40.0% |
| 3452856 | 3755.4.1.17 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N | 0.80 | 58.0 | 4.49e-01 | 76.6% | 40.0% |
| 4061395 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.77 | 53.0 | 5.00e-01 | 71.9% | 88.0% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.74 | 52.0 | 5.39e-01 | 73.4% | 81.7% |
| 5082565 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 51.0 | 5.01e-01 | 73.4% | 74.3% |
| 3966057 | 4239.2.1.1 ↗ | alpha arrays › DNA polymerase III theta subunit-like › LasR-specific antiactivator (QslA) › LasR-specific antiactivator (QslA) › QslA | 0.71 | 55.0 | 4.76e-01 | 82.8% | 64.2% |
| 3177598 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.70 | 54.0 | 4.64e-01 | 82.8% | 90.9% |
| 3335738 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.69 | 47.0 | 3.38e-01 | 71.9% | 88.9% |
| 3259758 | 109.4.1.454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD | 0.68 | 53.0 | 3.38e-01 | 84.4% | 23.5% |
| 3236470 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.68 | 57.0 | 4.09e-01 | 90.6% | 93.7% |
| 4785120 | 192.3.1.0 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain | 0.67 | 52.0 | 4.54e-01 | 89.1% | 55.1% |
| 4988487 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.67 | 47.0 | 4.38e-01 | 73.4% | 69.6% |
| 3652961 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.66 | 58.0 | 4.02e-01 | 96.9% | 68.8% |
| 4988477 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.65 | 52.0 | 3.41e-01 | 89.1% | 67.9% |
| 310229 | 5000.3.1.3 ↗ | alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Poxv_Bcl-2-like | 0.65 | 47.0 | 3.86e-01 | 78.1% | 48.7% |
| 3685185 | 192.17.1.10 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › eIF-3c_N | 0.64 | 51.0 | 4.15e-01 | 87.5% | 57.5% |
| 4961796 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.63 | 52.0 | 4.70e-01 | 92.2% | 76.7% |
| 5076914 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.63 | 46.0 | 3.90e-01 | 82.8% | 44.2% |
| 1159558 | 2498.1.1.28 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF885 | 0.62 | 49.0 | 2.93e-01 | 90.6% | 25.6% |
| 3799936 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.61 | 42.0 | 3.57e-01 | 81.2% | 41.8% |
| 5004226 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.59 | 47.0 | 3.18e-01 | 89.1% | 22.1% |
| 5023951 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.56 | 51.0 | 3.13e-01 | 100.0% | 20.8% |
| 3538468 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.55 | 46.0 | 3.84e-01 | 93.8% | 81.4% |
| 4441096 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.54 | 42.0 | 4.33e-01 | 90.6% | 95.0% |
| 3378723 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.53 | 40.0 | 3.81e-01 | 87.5% | 93.8% |
| None | — | 0.53 | 40.0 | 2.66e-01 | 81.2% | 22.2% | |
| 4046386 | 301.8.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N | 0.52 | 41.0 | 3.39e-01 | 84.4% | 68.2% |
D2
high
residues 81-120
Domain cluster:
rep: IMGVR_UViG_3300033172_000190-3300033172-Ga0334888_100616521__D23-60