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IMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016651
Arc-VirIMGVR_UViG_3300025156_000428-3300025156-Ga0209834_1000016651
Identity
- Kingdom:
- archaea
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.75 | 47.0 | 5.72e-01 | 92.9% | 100.0% |
| 4xxbB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.75 | 46.0 | 5.21e-01 | 98.2% | 83.3% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.66 | 40.0 | 4.39e-01 | 89.3% | 76.7% |
| 5y20A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 40.0 | 4.14e-01 | 87.5% | 76.9% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 39.0 | 3.94e-01 | 94.6% | 67.9% |
| 1wevA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.58 | 43.0 | 4.19e-01 | 89.3% | 71.9% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 37.0 | 4.13e-01 | 87.5% | 95.0% |
| 2eodA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 33.0 | 3.15e-01 | 89.3% | 47.0% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.55 | 38.0 | 4.01e-01 | 75.0% | 96.1% |
| 2luyA01 | 3.30.60.210 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain | 0.54 | 42.0 | 4.20e-01 | 89.3% | 93.0% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.54 | 46.0 | 4.01e-01 | 96.4% | 73.9% |
| 1kfiA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 39.0 | 3.13e-01 | 83.9% | 68.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3946860 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 47.0 | 5.19e-01 | 92.9% | 80.0% |
| 4944757 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 50.0 | 5.54e-01 | 96.4% | 97.8% |
| 3766109 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 39.0 | 4.12e-01 | 87.5% | 68.0% |
| 3185072 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.64 | 57.0 | 4.85e-01 | 100.0% | 72.2% |
| 3566630 | 375.1.1.254 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_3CxxC | 0.62 | 44.0 | 4.75e-01 | 92.9% | 95.6% |
| 3213181 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 50.0 | 5.20e-01 | 91.1% | 100.0% |
| 5023741 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 32.0 | 3.36e-01 | 75.0% | 52.0% |
| 4019855 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.58 | 34.0 | 3.79e-01 | 98.2% | 77.5% |
| 4577135 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.56 | 50.0 | 4.45e-01 | 100.0% | 70.0% |
| 4944026 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 46.0 | 4.43e-01 | 98.2% | 89.1% |
| 3460584 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.53 | 33.0 | 3.43e-01 | 92.9% | 68.0% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 46.0 | 4.39e-01 | 98.2% | 93.8% |
| 4929700 | 529.1.1.0 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) | 0.52 | 45.0 | 3.87e-01 | 100.0% | 71.1% |
| 3958187 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 41.0 | 4.08e-01 | 100.0% | 88.3% |
| 3408429 | 386.1.1.68 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › NOA36 | 0.50 | 46.0 | 3.36e-01 | 100.0% | 45.0% |