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IMGVR_UViG_3300025158_000681-3300025158-Ga0210012_10000844
Arc-VirIMGVR_UViG_3300025158_000681-3300025158-Ga0210012_10000844
Identity
- Kingdom:
- archaea
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-35
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.96 | 86.0 | 5.56e-01 | 100.0% | 25.0% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.95 | 85.0 | 6.77e-01 | 100.0% | 53.0% |
| 1iipA02 | 1.10.150.160 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.94 | 84.0 | 6.19e-01 | 100.0% | 41.2% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.93 | 82.0 | 7.46e-01 | 100.0% | 74.5% |
| 8befJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.93 | 83.0 | 5.16e-01 | 100.0% | 21.2% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.92 | 83.0 | 6.43e-01 | 100.0% | 49.3% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.91 | 79.0 | 5.34e-01 | 100.0% | 28.6% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.90 | 78.0 | 5.03e-01 | 100.0% | 23.8% |
| 4wnfA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.90 | 79.0 | 4.66e-01 | 100.0% | 13.7% |
| 3dzaA02 | 6.10.250.2140 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.89 | 76.0 | 6.19e-01 | 94.3% | 53.2% |
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.88 | 77.0 | 5.58e-01 | 100.0% | 37.6% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.86 | 74.0 | 6.29e-01 | 100.0% | 59.3% |
| 4yvoA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.86 | 74.0 | 5.09e-01 | 100.0% | 29.4% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 73.0 | 4.85e-01 | 100.0% | 25.5% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.86 | 73.0 | 6.75e-01 | 100.0% | 76.1% |
| 3pwfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.85 | 74.0 | 4.96e-01 | 100.0% | 27.5% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.84 | 72.0 | 5.65e-01 | 100.0% | 46.1% |
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.84 | 72.0 | 4.32e-01 | 100.0% | 14.0% |
| 3ziuA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.83 | 68.0 | 4.15e-01 | 100.0% | 15.3% |
| 2ra1A02 | 1.20.58.780 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 70.0 | 5.65e-01 | 97.1% | 50.0% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.83 | 71.0 | 6.29e-01 | 100.0% | 67.9% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.83 | 63.0 | 4.47e-01 | 100.0% | 27.6% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.83 | 70.0 | 4.83e-01 | 100.0% | 28.2% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.83 | 70.0 | 5.48e-01 | 100.0% | 46.8% |
| 2xkoC02 | 6.10.250.870 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.83 | 69.0 | 6.82e-01 | 100.0% | 94.6% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.81 | 67.0 | 4.70e-01 | 100.0% | 29.8% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.81 | 67.0 | 4.68e-01 | 100.0% | 28.2% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.80 | 66.0 | 5.31e-01 | 100.0% | 47.3% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.78 | 65.0 | 4.29e-01 | 100.0% | 23.5% |
| 2fbaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.77 | 68.0 | 3.78e-01 | 100.0% | 7.3% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.76 | 63.0 | 5.57e-01 | 100.0% | 62.5% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.75 | 65.0 | 5.36e-01 | 100.0% | 54.7% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.75 | 63.0 | 4.44e-01 | 100.0% | 30.5% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.72 | 60.0 | 3.86e-01 | 100.0% | 19.9% |
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.72 | 57.0 | 5.14e-01 | 97.1% | 64.2% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.68 | 56.0 | 3.23e-01 | 94.3% | 27.3% |
| 2a26B01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.66 | 54.0 | 5.18e-01 | 100.0% | 86.4% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 48.0 | 3.24e-01 | 100.0% | 19.5% |
| 2qtfA02 | 6.10.250.2860 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 54.0 | 4.92e-01 | 94.3% | 76.6% |
| 2va8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 47.0 | 4.15e-01 | 91.4% | 57.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4152566 | 4274.1.1.1 ↗ | extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › MalF_N_TM | 0.98 | 89.0 | 7.54e-01 | 100.0% | 63.6% |
| 3973024 | 3579.1.1.0 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J | 0.98 | 90.0 | 5.48e-01 | 100.0% | 19.4% |
| 4145393 | 3579.1.1.6 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE | 0.97 | 89.0 | 5.41e-01 | 100.0% | 19.4% |
| 1901266 | 1114.1.1.1 ↗ | alpha arrays › Serine acetyltransferase N-terminal domain › Serine acetyltransferase N-terminal domain › Serine acetyltransferase N-terminal domain › SATase_N | 0.97 | 88.0 | 5.63e-01 | 100.0% | 24.3% |
| 4545730 | 3579.1.1.6 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE | 0.97 | 87.0 | 5.34e-01 | 100.0% | 19.1% |
| 5003284 | 3579.1.1.0 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J | 0.96 | 87.0 | 5.43e-01 | 100.0% | 21.9% |
| 5034119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.96 | 87.0 | 5.21e-01 | 100.0% | 17.5% |
| 4326325 | 3579.1.1.6 ↗ | extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › MbhD+MbhE | 0.95 | 85.0 | 5.18e-01 | 100.0% | 18.4% |
| 3360337 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.94 | 85.0 | 8.10e-01 | 100.0% | 87.5% |
| 3630197 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.94 | 74.0 | 4.32e-01 | 85.7% | 12.2% |
| 3178691 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.93 | 85.0 | 5.26e-01 | 100.0% | 20.6% |
| 3347263 | 109.4.1.509 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT | 0.92 | 82.0 | 4.88e-01 | 100.0% | 15.9% |
| 3950387 | 604.39.1.0 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters | 0.92 | 80.0 | 4.90e-01 | 100.0% | 18.5% |
| 4173822 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.90 | 80.0 | 5.19e-01 | 100.0% | 24.1% |
| 4076485 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.90 | 79.0 | 5.87e-01 | 100.0% | 41.2% |
| 3283133 | 610.4.1.0 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain | 0.90 | 78.0 | 5.44e-01 | 100.0% | 31.8% |
| 3509178 | 604.12.1.44 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TPR_2 | 0.90 | 79.0 | 6.80e-01 | 100.0% | 63.6% |
| 3584523 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.90 | 79.0 | 5.03e-01 | 100.0% | 21.9% |
| 4993041 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.89 | 78.0 | 5.95e-01 | 100.0% | 45.0% |
| 3622798 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.89 | 78.0 | 4.79e-01 | 100.0% | 18.4% |
| 3193336 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.89 | 75.0 | 5.07e-01 | 94.3% | 27.5% |
| 5060559 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.89 | 80.0 | 6.61e-01 | 100.0% | 58.3% |
| 3406125 | 604.12.1.7 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1_C | 0.88 | 76.0 | 7.04e-01 | 100.0% | 77.8% |
| 4028271 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.88 | 78.0 | 6.45e-01 | 100.0% | 58.3% |
| 5030918 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.85 | 73.0 | 5.61e-01 | 100.0% | 43.8% |
| 3280908 | 4274.1.1.5 ↗ | extended segments › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › Transmembrane helices in MalF N-terminal region › PF28792 | 0.84 | 70.0 | 5.99e-01 | 100.0% | 58.3% |
| 3670473 | 220.1.1.227 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3119 | 0.83 | 74.0 | 4.85e-01 | 100.0% | 27.1% |