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IMGVR_UViG_3300025158_000681-3300025158-Ga0210012_10000846

Arc-Vir

IMGVR_UViG_3300025158_000681-3300025158-Ga0210012_10000846

Identity

Kingdom:
archaea

Quality

87.3 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-133_206-241
PDB
Domain cluster: rep: MT028491.1__QIG65974.1__phiOC_p332__00308__D5-225
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gxbA02 1.20.80.60 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.69 28.0 4.45e-01 73.3% 100.0%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.62 32.0 3.51e-01 96.4% 58.4%
1bwoA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.52 22.0 2.86e-01 75.8% 67.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737673 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.53 24.0 3.01e-01 87.3% 68.0%
D2 high residues 141-204
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 57.0 4.29e-01 93.8% 73.2%
4up8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 51.0 3.10e-01 84.4% 85.6%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 50.0 3.99e-01 90.6% 69.2%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 49.0 4.63e-01 89.1% 75.3%
2vzcB00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.57 45.0 3.75e-01 92.2% 78.6%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 41.0 4.24e-01 89.1% 86.7%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.56 41.0 2.81e-01 78.1% 83.3%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.70e-01 89.1% 63.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.24e-01 90.6% 87.5%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 37.0 3.61e-01 87.5% 62.0%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 36.0 3.55e-01 90.6% 61.4%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.54 44.0 3.88e-01 93.8% 78.8%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 43.0 3.49e-01 92.2% 61.7%
3zfvA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 44.0 3.42e-01 100.0% 87.8%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.52 40.0 3.74e-01 92.2% 67.1%
4mfiA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 2.62e-01 92.2% 78.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 44.0 4.56e-01 82.8% 75.0%
3681025 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 42.0 4.26e-01 89.1% 67.7%
5051575 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.61 44.0 3.23e-01 90.6% 27.8%
3459400 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.60 48.0 3.86e-01 89.1% 45.8%
3611713 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.60 43.0 4.30e-01 87.5% 75.4%
3311239 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.60 48.0 3.80e-01 89.1% 44.0%
4952808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.36e-01 89.1% 85.5%
4961900 101.1.1.187 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.60 43.0 4.11e-01 89.1% 66.7%
3824693 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.59 47.0 3.24e-01 90.6% 23.7%
3679527 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.59 45.0 3.94e-01 89.1% 54.0%
3369798 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.58 46.0 4.20e-01 89.1% 64.7%
4426191 101.1.3.26 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB 0.58 46.0 3.56e-01 90.6% 74.4%
3280874 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 43.0 2.65e-01 81.2% 31.1%
4970543 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.23e-01 89.1% 77.3%
4959343 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.55 43.0 3.93e-01 89.1% 65.6%
3797566 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 40.0 3.30e-01 78.1% 50.0%
3231576 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 38.0 3.80e-01 87.5% 72.9%
4660104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 4.02e-01 87.5% 86.2%
3585425 101.1.2.98 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1 0.53 40.0 3.60e-01 89.1% 57.9%
4965088 101.1.2.909 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF5797 0.52 37.0 3.43e-01 85.9% 56.5%
5051835 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 2.72e-01 92.2% 32.4%