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IMGVR_UViG_3300025159_000046-3300025159-Ga0209619_100033292

Arc-Vir

IMGVR_UViG_3300025159_000046-3300025159-Ga0209619_100033292

Identity

Kingdom:
archaea

Quality

94.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 38.0 4.06e-01 94.9% 78.3%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.66e-01 100.0% 86.8%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 36.0 3.55e-01 96.6% 58.1%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.56 41.0 3.84e-01 96.6% 64.8%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.26e-01 89.8% 86.4%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 45.0 3.30e-01 100.0% 79.6%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 40.0 4.02e-01 100.0% 86.9%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.50 37.0 2.74e-01 83.1% 68.0%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3580045 375.1.1.217 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26040 0.75 44.0 5.31e-01 93.2% 97.1%
3392762 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.75 44.0 5.16e-01 94.9% 97.1%
3623599 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.73 43.0 5.14e-01 93.2% 97.1%
3982469 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.72 44.0 5.05e-01 94.9% 90.0%
4927636 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 43.0 4.87e-01 94.9% 90.0%
4243492 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 39.0 3.96e-01 94.9% 56.7%
1122902 375.1.4.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI_C 0.65 49.0 5.11e-01 100.0% 87.3%
3929758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.61e-01 100.0% 80.0%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.62 39.0 3.86e-01 94.9% 58.5%
3620138 3246.1.1.4 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAMTS_CR_3 0.62 44.0 3.71e-01 94.9% 45.0%
3396514 386.1.1.259 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.61 37.0 4.13e-01 100.0% 80.0%
5030311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 39.0 3.99e-01 94.9% 69.1%
4972400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 42.0 4.64e-01 98.3% 97.8%
4976753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 4.39e-01 91.5% 85.5%
3175902 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 41.0 4.14e-01 100.0% 75.0%
3494433 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 43.0 3.42e-01 81.4% 58.9%
3898522 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 36.0 3.79e-01 93.2% 72.0%
5078768 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.57 36.0 2.68e-01 94.9% 23.7%
3184613 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 42.0 3.18e-01 84.7% 32.3%
3410793 398.1.1.0 ↗ few secondary structure elements › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers › Btk/CHORD zinc fingers 0.56 32.0 3.67e-01 89.8% 80.0%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 36.0 3.77e-01 98.3% 72.7%
4962895 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 36.0 3.71e-01 93.2% 70.9%
4962743 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 4.03e-01 94.9% 91.1%
4022266 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.54 41.0 2.95e-01 83.1% 37.8%
4117020 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 33.0 3.37e-01 98.3% 61.7%
3425088 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.53 39.0 3.86e-01 91.5% 73.8%
3882464 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 33.0 3.15e-01 94.9% 54.7%