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IMGVR_UViG_3300025159_000682-3300025159-Ga0209619_1000050837
Arc-VirIMGVR_UViG_3300025159_000682-3300025159-Ga0209619_1000050837
Identity
- Kingdom:
- archaea
Quality
70.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-72
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 53.0 | 3.68e-01 | 100.0% | 87.3% |
| 3h6eB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 40.0 | 3.67e-01 | 77.5% | 52.5% |
| 7cm3A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 39.0 | 3.06e-01 | 71.8% | 67.5% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 42.0 | 4.05e-01 | 98.6% | 78.3% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 41.0 | 3.11e-01 | 85.9% | 87.2% |
| 2pohA02 | 6.10.140.940 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 37.0 | 3.63e-01 | 74.6% | 76.6% |
| 1qhdA02 | 1.10.1350.10 | Mainly Alpha › Orthogonal Bundle › Viral capsid alpha domain › Viral capsid alpha domain | 0.50 | 42.0 | 2.92e-01 | 90.1% | 51.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5059158 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.62 | 43.0 | 3.46e-01 | 71.8% | 57.0% |
| 1503850 | 617.1.1.2 ↗ | alpha bundles › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › A virus capsid protein alpha-helical domain › Rota_Capsid_VP6 | 0.59 | 44.0 | 3.46e-01 | 80.3% | 80.4% |
| 3594861 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.58 | 50.0 | 3.74e-01 | 97.2% | 97.2% |
| 4946701 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 3.16e-01 | 71.8% | 35.9% |
| 3606304 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.56 | 42.0 | 3.26e-01 | 78.9% | 73.3% |
D2
high
residues 86-140