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IMGVR_UViG_3300025159_000828-3300025159-Ga0209619_1000369613
Arc-VirIMGVR_UViG_3300025159_000828-3300025159-Ga0209619_1000369613
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-51
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11211.14 best | DUF2997 | 52.1 | 6.60e-14 | 97.9% | 97.9% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c9iD01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.69 | 45.0 | 3.16e-01 | 75.0% | 19.9% |
| 5mmiG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.68 | 47.0 | 3.99e-01 | 75.0% | 41.7% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.67 | 50.0 | 3.77e-01 | 83.3% | 68.0% |
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.62 | 41.0 | 3.72e-01 | 75.0% | 47.9% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 42.0 | 3.05e-01 | 75.0% | 88.5% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.60 | 48.0 | 2.96e-01 | 95.8% | 22.3% |
| 3g9kF01 | 3.60.20.40 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit | 0.60 | 43.0 | 2.97e-01 | 77.1% | 33.1% |
| 1j7xA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.60 | 49.0 | 3.31e-01 | 100.0% | 56.5% |
| 1f0xA03 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.59 | 51.0 | 3.55e-01 | 100.0% | 30.1% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.59 | 40.0 | 3.56e-01 | 75.0% | 49.3% |
| 3tm4A01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.57 | 43.0 | 3.05e-01 | 89.6% | 69.3% |
| 5iroD00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 42.0 | 3.44e-01 | 85.4% | 85.3% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.55 | 45.0 | 2.98e-01 | 100.0% | 38.0% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.55 | 44.0 | 2.82e-01 | 97.9% | 63.2% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.55 | 37.0 | 3.26e-01 | 70.8% | 98.7% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 38.0 | 2.44e-01 | 75.0% | 60.1% |
| 6njeA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.53 | 45.0 | 2.80e-01 | 100.0% | 51.9% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 2.91e-01 | 100.0% | 41.3% |
| 2kyyA00 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.53 | 41.0 | 3.10e-01 | 97.9% | 56.2% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.53 | 40.0 | 3.10e-01 | 93.8% | 98.6% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 39.0 | 2.97e-01 | 81.2% | 55.6% |
| 2e7zA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.53 | 37.0 | 3.61e-01 | 77.1% | 73.7% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.53 | 37.0 | 2.99e-01 | 75.0% | 47.4% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 41.0 | 2.97e-01 | 100.0% | 80.1% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 41.0 | 2.98e-01 | 100.0% | 63.4% |
| 3f4lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 38.0 | 2.58e-01 | 83.3% | 25.1% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 3.34e-01 | 91.7% | 49.5% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.51 | 35.0 | 2.60e-01 | 72.9% | 85.8% |
| 1kqfA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 2.68e-01 | 95.8% | 67.4% |
| 5xukA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.50 | 37.0 | 2.93e-01 | 77.1% | 94.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4006548 | 331.19.1.2 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N | 0.67 | 49.0 | 3.92e-01 | 79.2% | 43.2% |
| 3940660 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.67 | 46.0 | 2.62e-01 | 75.0% | 6.4% |
| 3281747 | 213.5.1.1 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like | 0.66 | 45.0 | 3.68e-01 | 75.0% | 35.2% |
| 3800293 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 50.0 | 4.21e-01 | 93.8% | 58.1% |
| 3633074 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.63 | 42.0 | 2.84e-01 | 70.8% | 18.5% |
| 4936127 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.63 | 48.0 | 4.34e-01 | 93.8% | 65.3% |
| 4969691 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.62 | 49.0 | 3.29e-01 | 100.0% | 50.2% |
| 3468979 | 312.1.1.18 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › PF26217 | 0.62 | 49.0 | 3.48e-01 | 93.8% | 38.8% |
| 2576213 | 219.3.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain | 0.61 | 52.0 | 3.33e-01 | 97.9% | 31.8% |
| 3987094 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.60 | 45.0 | 3.44e-01 | 83.3% | 63.3% |
| 3444901 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.60 | 49.0 | 3.47e-01 | 100.0% | 30.9% |
| 3587631 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.59 | 50.0 | 3.67e-01 | 100.0% | 67.1% |
| 3608400 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.59 | 33.0 | 2.27e-01 | 77.1% | 15.6% |
| 4026067 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 46.0 | 2.70e-01 | 93.8% | 86.2% |
| 3334474 | 7581.1.1.25 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › FAE1_CUT1_RppA, ACP_syn_III_C | 0.57 | 44.0 | 2.91e-01 | 87.5% | 20.0% |
| 3441516 | 109.3.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 | 0.57 | 46.0 | 2.88e-01 | 100.0% | 21.5% |
| 5019906 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.56 | 42.0 | 2.66e-01 | 81.2% | 29.8% |
| 3266302 | 543.1.1.0 ↗ | few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related | 0.56 | 41.0 | 2.90e-01 | 81.2% | 82.5% |
| 4985007 | 7581.1.1.6 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C | 0.56 | 45.0 | 3.31e-01 | 93.8% | 35.7% |
| 3261151 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 46.0 | 2.93e-01 | 100.0% | 26.8% |
| 3646861 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.56 | 39.0 | 2.66e-01 | 79.2% | 39.1% |
| 5083931 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.55 | 45.0 | 3.22e-01 | 100.0% | 30.9% |
| 3454374 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.55 | 44.0 | 2.73e-01 | 100.0% | 29.7% |
| 3290062 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 2.91e-01 | 100.0% | 54.3% |
| 1224463 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.55 | 37.0 | 3.73e-01 | 75.0% | 75.5% |
| 4934021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 3.21e-01 | 87.5% | 60.8% |
| 4595166 | 5076.2.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ | 0.54 | 44.0 | 2.96e-01 | 100.0% | 98.2% |
| 3170899 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 38.0 | 3.15e-01 | 79.2% | 58.1% |
| 3798928 | 59.1.4.2 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 | 0.54 | 37.0 | 2.18e-01 | 75.0% | 8.8% |
| 3721318 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.53 | 42.0 | 3.72e-01 | 100.0% | 67.1% |
| 3391754 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 39.0 | 3.14e-01 | 83.3% | 55.5% |
| 3471467 | 101.1.2.169 ↗ | alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 | 0.52 | 38.0 | 3.10e-01 | 85.4% | 44.8% |
| 4064579 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.52 | 41.0 | 3.31e-01 | 100.0% | 84.3% |
| 3813714 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 40.0 | 2.34e-01 | 100.0% | 11.7% |
| 3850966 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.51 | 40.0 | 2.67e-01 | 93.8% | 20.0% |
| 3641356 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.51 | 42.0 | 3.76e-01 | 100.0% | 74.7% |
| 3369986 | 109.3.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank | 0.51 | 43.0 | 2.76e-01 | 100.0% | 41.6% |
| 3807532 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 2.49e-01 | 100.0% | 15.5% |
| 3609802 | 221.7.1.2 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E1_UFD | 0.51 | 35.0 | 2.87e-01 | 79.2% | 84.3% |
| 3592522 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 37.0 | 2.89e-01 | 83.3% | 37.6% |
| 3662757 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.50 | 34.0 | 2.25e-01 | 75.0% | 16.6% |