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IMGVR_UViG_3300025159_001134-3300025159-Ga0209619_100024691
Arc-VirIMGVR_UViG_3300025159_001134-3300025159-Ga0209619_100024691
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 110-284
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22530.3 best | Terminase-T7_RNaseH-like | 34.2 | 3.50e-08 | 64.6% | 99.1% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c6aA00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.78 | 72.0 | 6.88e-01 | 100.0% | 86.4% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.76 | 55.0 | 6.31e-01 | 89.7% | 100.0% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.76 | 69.0 | 6.22e-01 | 94.9% | 93.4% |
| 1kcfB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.72 | 64.0 | 5.82e-01 | 93.7% | 83.3% |
| 7essA01 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.68 | 50.0 | 5.69e-01 | 91.4% | 100.0% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 54.0 | 5.16e-01 | 94.3% | 99.5% |
| 2x6nD00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 46.0 | 4.61e-01 | 79.4% | 99.4% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 41.0 | 4.35e-01 | 83.4% | 80.9% |
| 3lkbA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 49.0 | 4.60e-01 | 98.9% | 79.1% |
| 3hnoA01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 3.47e-01 | 70.3% | 96.4% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 40.0 | 3.36e-01 | 77.7% | 90.9% |
| 6jowA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 43.0 | 3.20e-01 | 84.6% | 79.6% |
| 2lcqA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.53 | 30.0 | 3.40e-01 | 90.3% | 73.2% |
| 3loqA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 35.0 | 3.93e-01 | 94.9% | 91.5% |
| 5e7qA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 41.0 | 3.12e-01 | 82.3% | 51.5% |
| 2fl4A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 26.0 | 3.34e-01 | 77.1% | 80.8% |
| 1rqeA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 40.0 | 3.44e-01 | 81.7% | 98.2% |
| 3rotA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 33.0 | 3.67e-01 | 89.1% | 81.8% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 35.0 | 3.67e-01 | 100.0% | 75.6% |
| 4nicA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 33.0 | 3.91e-01 | 90.9% | 99.1% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.84 | 75.0 | 7.24e-01 | 98.9% | 84.1% |
| 2877581 | 2484.1.1.95 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like | 0.83 | 79.0 | 6.73e-01 | 98.9% | 85.8% |
| 4974990 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.83 | 75.0 | 7.53e-01 | 99.4% | 93.7% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 79.0 | 7.48e-01 | 100.0% | 94.0% |
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 76.0 | 7.57e-01 | 96.6% | 93.9% |
| 5081671 | 2484.1.1.76 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C | 0.81 | 72.0 | 7.17e-01 | 98.9% | 90.6% |
| 3707575 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.78 | 56.0 | 5.85e-01 | 92.6% | 80.0% |
| 5041440 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 71.0 | 6.66e-01 | 97.1% | 91.9% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 71.0 | 6.67e-01 | 96.6% | 92.2% |
| 3927362 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 58.0 | 6.16e-01 | 92.6% | 87.7% |
| 3943513 | 2484.1.1.74 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tex_YqgF | 0.77 | 56.0 | 6.03e-01 | 92.0% | 86.7% |
| 3942673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 70.0 | 6.82e-01 | 97.1% | 90.5% |
| 1695398 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 70.0 | 6.31e-01 | 97.1% | 94.3% |
| 5031041 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.76 | 72.0 | 6.90e-01 | 100.0% | 91.3% |
| 4954544 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.75 | 69.0 | 6.73e-01 | 96.6% | 90.0% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.75 | 67.0 | 6.13e-01 | 93.1% | 76.8% |
| 3733593 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.74 | 58.0 | 5.99e-01 | 94.3% | 86.1% |
| 3177843 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.71 | 58.0 | 5.95e-01 | 94.9% | 90.3% |
| 4038287 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.67 | 50.0 | 5.68e-01 | 91.4% | 100.0% |
| 4308615 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.67 | 50.0 | 5.64e-01 | 91.4% | 100.0% |
| 5075835 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.67 | 48.0 | 5.57e-01 | 94.9% | 99.2% |
| None | — | 0.65 | 58.0 | 3.71e-01 | 94.3% | 33.9% | |
| 4278038 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 57.0 | 3.68e-01 | 95.4% | 34.2% |
| 4209208 | 2007.1.2.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF2325 | 0.63 | 36.0 | 4.57e-01 | 91.4% | 100.0% |
| 4976122 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.61 | 36.0 | 4.13e-01 | 93.1% | 79.2% |
| 4978257 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.59 | 34.0 | 3.88e-01 | 91.4% | 74.6% |
| 5027917 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.59 | 44.0 | 4.00e-01 | 86.3% | 56.7% |
| 5012131 | 2006.1.4.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_6 | 0.57 | 32.0 | 3.71e-01 | 90.3% | 76.7% |
| 3504007 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 49.0 | 4.59e-01 | 94.9% | 86.0% |
| 4984677 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.55 | 36.0 | 4.07e-01 | 92.6% | 87.7% |
| 3592079 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.55 | 40.0 | 4.10e-01 | 92.0% | 77.6% |
| 3453547 | 2484.1.1.110 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE | 0.55 | 43.0 | 3.73e-01 | 83.4% | 75.6% |
| 4984748 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.54 | 33.0 | 3.39e-01 | 90.3% | 59.4% |
| 4991430 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.54 | 33.0 | 3.35e-01 | 89.1% | 59.4% |
| 4247062 | 2002.1.1.25 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like | 0.54 | 42.0 | 3.25e-01 | 82.9% | 65.2% |
| 5029061 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.54 | 33.0 | 3.82e-01 | 92.0% | 83.1% |
| 4943267 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.53 | 32.0 | 3.64e-01 | 93.7% | 78.5% |
| 3617779 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 46.0 | 4.47e-01 | 93.7% | 96.8% |
| 3303791 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 45.0 | 3.21e-01 | 94.3% | 87.6% |
| 5047016 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.50 | 33.0 | 3.69e-01 | 92.6% | 84.4% |
| 3613184 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.50 | 39.0 | 3.94e-01 | 96.6% | 79.4% |
| 4933399 | 2007.1.14.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like | 0.50 | 34.0 | 3.81e-01 | 94.3% | 92.8% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.50 | 43.0 | 3.45e-01 | 92.0% | 66.1% |
| 4987581 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.50 | 40.0 | 3.90e-01 | 82.9% | 94.2% |
| 4643206 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.50 | 43.0 | 4.34e-01 | 96.0% | 90.6% |
D2
medium
residues 1-89
Domain cluster:
rep: AY855346.1__AAX53415.1__X__00002__D1-87
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080206 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 82.0 | 5.50e-01 | 100.0% | 35.1% |
| 3964368 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.85 | 76.0 | 5.25e-01 | 100.0% | 32.1% |
| 3725080 | 220.1.1.34 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 | 0.53 | 45.0 | 3.35e-01 | 100.0% | 79.6% |
| 3995122 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 39.0 | 3.00e-01 | 83.1% | 79.6% |