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IMGVR_UViG_3300025164_001581-3300025164-Ga0209521_1001694414
Arc-VirIMGVR_UViG_3300025164_001581-3300025164-Ga0209521_1001694414
Identity
- Kingdom:
- archaea
Quality
80.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-70
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.63 | 38.0 | 2.77e-01 | 72.7% | 20.3% |
| 1wdhA02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.60 | 44.0 | 3.90e-01 | 80.3% | 93.1% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 40.0 | 2.88e-01 | 77.3% | 22.1% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.58 | 42.0 | 4.12e-01 | 75.8% | 74.3% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 34.0 | 3.57e-01 | 89.4% | 67.2% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.55 | 40.0 | 3.48e-01 | 78.8% | 99.0% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.54 | 38.0 | 3.01e-01 | 74.2% | 45.8% |
| 3qv0A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.54 | 45.0 | 3.37e-01 | 95.5% | 64.8% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.54 | 37.0 | 2.63e-01 | 100.0% | 21.1% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.54 | 37.0 | 3.41e-01 | 90.9% | 54.1% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.02e-01 | 86.4% | 39.2% |
| 6jmtB01 | 1.10.220.150 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Arf GTPase activating protein | 0.52 | 44.0 | 3.86e-01 | 98.5% | 77.4% |
| 1knzA01 | 6.10.280.20 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain | 0.52 | 45.0 | 3.87e-01 | 95.5% | 92.2% |
| 3hl1A02 | 6.10.140.1530 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 36.0 | 3.67e-01 | 72.7% | 80.0% |
| 1rx0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 37.0 | 2.84e-01 | 89.4% | 32.9% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.51 | 39.0 | 2.94e-01 | 87.9% | 76.4% |
| 1egdA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 38.0 | 3.05e-01 | 81.8% | 98.6% |
| 2vkzA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 2.57e-01 | 80.3% | 26.7% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 44.0 | 2.72e-01 | 98.5% | 74.1% |
| 1lqsL01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 34.0 | 3.00e-01 | 81.8% | 47.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3729821 | 3191.1.1.1 ↗ | alpha duplicates or obligate multimers › RyR motifs › RyR motifs › RyR motifs › RyR | 0.71 | 64.0 | 4.81e-01 | 100.0% | 96.1% |
| 3815587 | 3397.1.1.0 ↗ | a+b complex topology › Tic22 › Tic22 › Tic22 | 0.64 | 46.0 | 3.55e-01 | 75.8% | 48.3% |
| 3310231 | 103.1.1.3 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N | 0.64 | 47.0 | 3.92e-01 | 78.8% | 68.7% |
| 4025799 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.59 | 51.0 | 3.60e-01 | 92.4% | 39.5% |
| 3714994 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 42.0 | 3.02e-01 | 75.8% | 100.0% |
| 3504469 | 109.40.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C | 0.56 | 39.0 | 3.31e-01 | 74.2% | 65.8% |
| 4206404 | 103.4.1.26 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding | 0.56 | 38.0 | 3.41e-01 | 89.4% | 49.5% |
| 5078215 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 44.0 | 2.90e-01 | 86.4% | 89.8% |
| 3355320 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.55 | 46.0 | 4.38e-01 | 95.5% | 92.5% |
| 3646270 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.55 | 36.0 | 3.55e-01 | 87.9% | 61.3% |
| 3813837 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.55 | 37.0 | 3.55e-01 | 93.9% | 61.3% |
| 4683333 | 138.1.1.5 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_gamma3 | 0.54 | 42.0 | 3.49e-01 | 84.8% | 85.8% |
| 3229717 | 3470.1.1.29 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV | 0.53 | 39.0 | 3.87e-01 | 100.0% | 75.7% |
| 3424167 | 3826.1.1.84 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF7797 | 0.53 | 33.0 | 3.11e-01 | 87.9% | 50.0% |
| 3270180 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.53 | 38.0 | 3.48e-01 | 77.3% | 57.8% |
| 3518306 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 41.0 | 2.76e-01 | 97.0% | 69.7% |
| 4064871 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.51 | 44.0 | 3.17e-01 | 100.0% | 66.3% |
| 3348810 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.50 | 38.0 | 3.39e-01 | 81.8% | 87.4% |
| 4020856 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.50 | 44.0 | 3.52e-01 | 100.0% | 57.8% |