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IMGVR_UViG_3300025164_001581-3300025164-Ga0209521_100169448
Arc-VirIMGVR_UViG_3300025164_001581-3300025164-Ga0209521_100169448
Identity
- Kingdom:
- archaea
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 8-57
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a62A01 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.68 | 46.0 | 4.81e-01 | 100.0% | 78.3% |
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.66 | 56.0 | 3.97e-01 | 100.0% | 32.0% |
| 1uyvB02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.65 | 51.0 | 3.21e-01 | 90.0% | 19.6% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.63 | 53.0 | 4.58e-01 | 100.0% | 69.0% |
| 4k7jA01 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.63 | 51.0 | 3.42e-01 | 98.0% | 82.3% |
| 1pmiA02 | 1.10.441.10 | Mainly Alpha › Orthogonal Bundle › Phosphomannose Isomerase; domain 2 › Phosphomannose Isomerase, domain 2 | 0.61 | 43.0 | 3.15e-01 | 74.0% | 55.9% |
| 1huxA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 50.0 | 3.73e-01 | 98.0% | 35.0% |
| 7craA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 46.0 | 3.85e-01 | 88.0% | 83.7% |
| 2n00A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 45.0 | 3.75e-01 | 90.0% | 76.8% |
| 2j8pA00 | 1.10.20.70 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Transcription termination and cleavage factor, C-terminal domain | 0.56 | 41.0 | 4.19e-01 | 98.0% | 85.7% |
| 4neiA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.55 | 38.0 | 2.33e-01 | 72.0% | 28.2% |
| 1rxqD00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.55 | 46.0 | 3.25e-01 | 96.0% | 84.6% |
| 5idmA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 48.0 | 3.30e-01 | 100.0% | 29.4% |
| 2do9A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 45.0 | 3.89e-01 | 98.0% | 83.3% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 46.0 | 3.28e-01 | 100.0% | 77.3% |
| 3w1oA00 | 3.40.1760.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › | 0.53 | 44.0 | 3.44e-01 | 98.0% | 93.9% |
| 2yjgA01 | 3.90.226.30 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain | 0.52 | 39.0 | 2.72e-01 | 84.0% | 69.7% |
| 2e2oA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 41.0 | 3.00e-01 | 100.0% | 44.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4433184 | 130.1.1.3 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N | 0.70 | 48.0 | 4.68e-01 | 100.0% | 65.5% |
| 3708175 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.64 | 54.0 | 5.34e-01 | 100.0% | 90.9% |
| 4462490 | 2007.1.2.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LppC | 0.62 | 47.0 | 3.16e-01 | 96.0% | 21.0% |
| 3272915 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.61 | 48.0 | 4.71e-01 | 88.0% | 90.9% |
| 3684006 | 148.1.3.205 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 | 0.60 | 52.0 | 4.49e-01 | 100.0% | 87.5% |
| 3929757 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.59 | 45.0 | 4.13e-01 | 100.0% | 61.3% |
| 4988048 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.59 | 47.0 | 4.57e-01 | 96.0% | 86.7% |
| 3374990 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.56 | 47.0 | 3.03e-01 | 100.0% | 78.2% |
| 4981747 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.56 | 49.0 | 4.49e-01 | 98.0% | 92.3% |
| 3795168 | 2007.1.6.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › ELFV_dehydrog_N | 0.55 | 46.0 | 3.01e-01 | 98.0% | 26.1% |
| 5035480 | 159.1.2.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like | 0.53 | 37.0 | 2.86e-01 | 74.0% | 35.5% |
| 3282905 | 4085.2.1.1 ↗ | alpha arrays › RbcX-like › uncharacterized protein LPG2149 › uncharacterized protein LPG2149 › Helicase_C_3 | 0.52 | 39.0 | 3.29e-01 | 82.0% | 81.2% |
D2
medium
residues 71-105
Domain cluster:
representative