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IMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003655
Arc-VirIMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003655
Identity
- Kingdom:
- archaea
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-179
Domain cluster:
rep: MK170447__AZF89918.1__X__00084__D3-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09250.17 best | Prim-Pol | 59.4 | 8.70e-16 | 89.9% | 94.9% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1konA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.58 | 24.0 | 3.45e-01 | 95.0% | 85.3% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 26.0 | 3.56e-01 | 87.2% | 86.7% |
| 5uazA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 30.0 | 3.88e-01 | 78.2% | 100.0% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 35.0 | 4.06e-01 | 78.2% | 90.8% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 24.0 | 3.26e-01 | 94.4% | 86.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039858 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.87 | 75.0 | 7.94e-01 | 97.2% | 98.8% |
| 4940784 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.83 | 70.0 | 7.50e-01 | 97.2% | 100.0% |
| 3280020 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.75 | 69.0 | 6.97e-01 | 96.1% | 97.1% |
| 5044094 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.64 | 53.0 | 4.87e-01 | 87.7% | 84.8% |
| 5011497 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.63 | 55.0 | 5.33e-01 | 92.2% | 95.0% |
| 2721360 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.61 | 55.0 | 5.49e-01 | 97.2% | 99.5% |
| 4441734 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.61 | 53.0 | 5.30e-01 | 92.7% | 100.0% |
| 5010991 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.55 | 47.0 | 4.71e-01 | 88.8% | 95.5% |
| 3243918 | 382.1.1.18 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF7741 | 0.55 | 22.0 | 3.08e-01 | 81.0% | 73.8% |
| 4681298 | 304.24.1.16 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA | 0.53 | 26.0 | 3.40e-01 | 75.4% | 82.0% |
D2
medium
residues 187-326
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zud400 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.60 | 26.0 | 3.75e-01 | 74.3% | 87.9% |
| 2al3A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 31.0 | 4.02e-01 | 75.0% | 92.1% |
| 1g5aA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 32.0 | 4.18e-01 | 99.3% | 98.6% |
| 1c9fA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 29.0 | 3.54e-01 | 74.3% | 74.7% |
| 2zeqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 30.0 | 3.91e-01 | 77.1% | 92.3% |
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 31.0 | 3.69e-01 | 82.1% | 79.6% |
| 2kk8A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 30.0 | 3.87e-01 | 77.1% | 100.0% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 27.0 | 3.59e-01 | 79.3% | 87.2% |
| 1we6A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 30.0 | 3.37e-01 | 77.1% | 67.6% |
| 4hwiB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 29.0 | 3.83e-01 | 77.1% | 100.0% |
| 2hjqA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.54 | 21.0 | 3.13e-01 | 85.0% | 86.8% |
| 1rrmA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.53 | 38.0 | 3.41e-01 | 72.9% | 99.0% |
| 3rt3B01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 29.0 | 3.72e-01 | 77.1% | 97.3% |
| 2cr5A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 30.0 | 3.74e-01 | 77.9% | 95.0% |
| 1wx8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 30.0 | 3.45e-01 | 78.6% | 78.1% |
| 4ofyD03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 25.0 | 2.92e-01 | 77.9% | 63.5% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 28.0 | 3.35e-01 | 82.1% | 77.3% |
| 2kmcA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 31.0 | 3.50e-01 | 77.1% | 80.4% |
| 2l3bA00 | 2.60.40.2410 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF12988, DUF3872 | 0.50 | 28.0 | 2.94e-01 | 77.1% | 56.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3882461 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.65 | 34.0 | 4.49e-01 | 77.1% | 93.3% |
| 3900526 | 221.1.1.12 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD | 0.62 | 32.0 | 4.18e-01 | 77.1% | 87.5% |
| 4118498 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.61 | 31.0 | 3.95e-01 | 90.7% | 81.2% |
| 3776212 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 31.0 | 4.16e-01 | 77.1% | 93.3% |
| 3414328 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 31.0 | 4.04e-01 | 76.4% | 90.7% |
| 3920797 | 221.1.1.12 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD | 0.57 | 30.0 | 3.78e-01 | 76.4% | 86.3% |
| 3420159 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.57 | 31.0 | 4.04e-01 | 77.1% | 97.3% |
| 3306863 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.57 | 31.0 | 3.64e-01 | 77.1% | 75.8% |
| 3414356 | 221.1.1.12 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RBD | 0.56 | 29.0 | 3.88e-01 | 76.4% | 97.1% |
| 3720930 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 32.0 | 4.00e-01 | 77.1% | 92.9% |
| 3487103 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 32.0 | 4.00e-01 | 77.1% | 97.5% |
| 3448485 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 30.0 | 3.68e-01 | 77.1% | 84.7% |
| 3491355 | 221.1.1.70 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › OTU1_UBXL | 0.55 | 32.0 | 3.99e-01 | 77.1% | 97.5% |
| 4981877 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.55 | 28.0 | 3.45e-01 | 97.1% | 78.8% |
| 3309517 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.54 | 30.0 | 3.75e-01 | 76.4% | 89.4% |
| 3833546 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 30.0 | 3.58e-01 | 77.1% | 82.2% |
| 3787211 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 32.0 | 3.72e-01 | 77.1% | 82.0% |
| 3618988 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 31.0 | 3.56e-01 | 77.1% | 79.0% |
| 3517465 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 30.0 | 3.80e-01 | 83.6% | 96.2% |
| 3716138 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 32.0 | 3.88e-01 | 78.6% | 97.6% |
| 3446792 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 27.0 | 3.57e-01 | 85.7% | 95.7% |
| 4022474 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 30.0 | 3.54e-01 | 77.1% | 85.6% |
| 3262427 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.51 | 31.0 | 3.73e-01 | 79.3% | 94.4% |
| 3264262 | 221.1.1.53 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_3 | 0.51 | 29.0 | 3.58e-01 | 77.1% | 91.8% |
| 3787635 | 5053.1.1.1 ↗ | alpha complex topology › Clc chloride channel › Clc chloride channel › Clc chloride channel › Voltage_CLC | 0.51 | 45.0 | 3.11e-01 | 99.3% | 78.8% |
| 3887025 | 11.1.1.117 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind | 0.50 | 28.0 | 3.24e-01 | 85.7% | 75.0% |