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IMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003657

Arc-Vir

IMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003657

Identity

Kingdom:
archaea

Quality

88.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-84
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.93 82.0 7.48e-01 93.1% 78.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 78.0 7.58e-01 89.7% 83.9%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.91 82.0 6.34e-01 96.6% 48.7%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 67.0 6.74e-01 81.0% 77.6%
1cm5A00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.86 70.0 3.83e-01 86.2% 6.7%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.85 75.0 7.10e-01 96.6% 88.2%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.85 57.0 6.36e-01 70.7% 97.8%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.83 71.0 6.46e-01 96.6% 72.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.83 75.0 6.39e-01 98.3% 66.7%
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.82 72.0 6.25e-01 98.3% 63.6%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 64.0 5.83e-01 98.3% 65.8%
3zgxA02 6.10.140.1720 Special › Helix non-globular › Helix Hairpins › 0.78 69.0 5.90e-01 98.3% 63.7%
1wpaA01 6.10.140.340 Special › Helix non-globular › Helix Hairpins › 0.76 63.0 5.29e-01 91.4% 83.8%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.76 63.0 4.71e-01 89.7% 38.7%
1tmxB00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.76 51.0 3.22e-01 77.6% 14.3%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.73 63.0 4.16e-01 98.3% 23.7%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.73 57.0 5.16e-01 87.9% 62.2%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.72 51.0 5.19e-01 79.3% 76.8%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 61.0 4.18e-01 100.0% 27.5%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 56.0 5.53e-01 87.9% 82.3%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.71 48.0 5.38e-01 72.4% 97.6%
2ca5A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 59.0 5.82e-01 94.8% 91.9%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 55.0 4.52e-01 93.1% 48.2%
4fxdA06 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.64 51.0 3.71e-01 87.9% 71.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024277 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 85.0 7.66e-01 96.6% 78.7%
5063166 192.7.1.2 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.93 84.0 6.72e-01 96.6% 53.3%
3607086 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.93 83.0 7.30e-01 100.0% 68.8%
5065764 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.91 79.0 6.32e-01 93.1% 51.4%
3594586 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.90 84.0 6.92e-01 100.0% 66.3%
3201381 192.8.1.139 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Fung_rhodopsin 0.87 71.0 6.43e-01 89.7% 66.7%
3725261 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.85 76.0 4.72e-01 98.3% 20.3%
4665988 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.83 74.0 6.03e-01 100.0% 54.3%
3170797 605.4.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.82 72.0 5.65e-01 98.3% 47.5%
4513812 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.75 66.0 6.08e-01 96.6% 76.0%
4980095 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.75 67.0 5.47e-01 98.3% 95.2%
3290011 3843.1.1.4 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB 0.69 57.0 5.01e-01 100.0% 60.0%