Back to structures

IMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003665

Arc-Vir

IMGVR_UViG_3300025167_000008-3300025167-Ga0209642_1000003665

Quality

77.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 47.0 4.67e-01 79.0% 57.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 49.0 4.07e-01 74.2% 38.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 48.0 4.94e-01 74.2% 66.1%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 4.99e-01 75.8% 66.1%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 45.0 4.52e-01 74.2% 58.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 45.0 4.36e-01 71.0% 53.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 52.0 4.70e-01 77.4% 56.2%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.02e-01 75.8% 68.1%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 45.0 4.21e-01 74.2% 52.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 4.21e-01 80.6% 53.4%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 4.21e-01 79.0% 41.9%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 50.0 4.22e-01 77.4% 47.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.08e-01 75.8% 44.4%
4xsgB00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.67 55.0 3.87e-01 91.9% 62.4%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.67 41.0 4.65e-01 100.0% 84.8%
8ew8A01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.66 45.0 3.02e-01 75.8% 19.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.62e-01 79.0% 68.9%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 46.0 5.04e-01 93.5% 97.9%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.65 54.0 4.06e-01 93.5% 56.2%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 45.0 3.89e-01 75.8% 48.4%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 55.0 3.83e-01 100.0% 47.0%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 4.29e-01 93.5% 61.8%
7syvx01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 54.0 4.21e-01 100.0% 56.9%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 39.0 3.80e-01 74.2% 57.1%
3slzA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.60 45.0 3.74e-01 100.0% 43.9%
1qcsA02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.60 52.0 4.44e-01 100.0% 85.7%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 51.0 4.33e-01 100.0% 74.3%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.59 52.0 3.83e-01 98.4% 44.6%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 52.0 4.36e-01 100.0% 69.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 51.0 4.29e-01 95.2% 57.3%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 47.0 4.00e-01 93.5% 61.8%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 49.0 4.22e-01 100.0% 69.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 49.0 4.24e-01 100.0% 65.4%
1xjvA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 3.19e-01 77.4% 83.2%
3ptaA04 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.56 50.0 3.54e-01 100.0% 39.8%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.55 43.0 3.45e-01 93.5% 59.7%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.53 39.0 3.40e-01 100.0% 50.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.59e-01 91.9% 68.2%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 42.0 3.17e-01 100.0% 32.6%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 40.0 3.89e-01 100.0% 75.0%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.60e-01 79.0% 64.5%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.51 41.0 3.49e-01 100.0% 82.5%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.51 36.0 2.97e-01 80.6% 43.7%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 2.85e-01 75.8% 95.4%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3315471 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.82 50.0 4.48e-01 74.2% 45.9%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 51.0 4.44e-01 77.4% 44.4%
3585538 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 51.0 4.25e-01 75.8% 41.0%
3184389 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 4.09e-01 77.4% 30.9%
3570369 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 53.0 4.64e-01 77.4% 47.8%
5054112 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 5.66e-01 77.4% 84.6%
3730835 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.78 52.0 4.47e-01 74.2% 45.3%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.76 49.0 4.61e-01 77.4% 54.7%
3497989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.44e-01 79.0% 75.0%
3326132 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 46.0 4.58e-01 79.0% 58.5%
3492680 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.75 65.0 5.15e-01 93.5% 73.3%
3256053 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.75 52.0 4.57e-01 77.4% 50.0%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.75 46.0 4.15e-01 79.0% 45.9%
4545465 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.75 54.0 5.08e-01 75.8% 96.0%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 48.0 4.22e-01 77.4% 45.6%
3826141 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 4.78e-01 77.4% 66.7%
3709896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 4.69e-01 77.4% 54.1%
3216974 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 51.0 4.65e-01 72.6% 71.2%
3410370 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.07e-01 75.8% 67.1%
3791752 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 49.0 4.82e-01 75.8% 66.2%
1826911 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 51.0 4.52e-01 74.2% 55.2%
3931161 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 53.0 4.27e-01 77.4% 61.7%
4950268 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 52.0 5.29e-01 93.5% 78.3%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 58.0 5.16e-01 93.5% 62.5%
4003477 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 53.0 4.41e-01 77.4% 68.0%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.71 50.0 4.75e-01 77.4% 62.7%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 49.0 4.36e-01 77.4% 51.1%
4549698 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 50.0 4.25e-01 74.2% 48.4%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 62.0 5.10e-01 100.0% 70.9%
4967823 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.69 63.0 5.89e-01 100.0% 92.0%
4868829 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.68 58.0 4.62e-01 93.5% 72.6%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.68 60.0 4.89e-01 100.0% 73.3%
4040055 4.26.1.1 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.68 44.0 4.53e-01 71.0% 70.7%
5078822 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.68 60.0 4.92e-01 100.0% 76.5%
3589736 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 55.0 5.31e-01 95.2% 78.6%
5053822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 59.0 4.69e-01 100.0% 71.5%
4021511 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 46.0 4.27e-01 72.6% 96.2%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 60.0 5.18e-01 100.0% 68.4%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 59.0 5.11e-01 100.0% 67.4%
3219409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.00e-01 75.8% 50.0%
4934423 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 58.0 4.79e-01 100.0% 72.7%
2036627 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.65 46.0 4.44e-01 93.5% 66.2%
5015822 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 57.0 4.74e-01 100.0% 70.9%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 54.0 4.85e-01 91.9% 96.5%
4928053 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 4.60e-01 100.0% 67.5%
3784453 239.3.1.0 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain 0.64 56.0 4.21e-01 100.0% 74.4%
5026244 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.88e-01 100.0% 65.6%
3699413 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.64 53.0 4.48e-01 93.5% 63.3%
5003338 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 4.79e-01 100.0% 72.4%
5064148 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.66e-01 100.0% 76.4%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.64 53.0 4.80e-01 100.0% 68.2%
3578245 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 53.0 4.30e-01 93.5% 57.5%
1323508 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 46.0 3.53e-01 77.4% 55.8%
5024134 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 55.0 4.30e-01 100.0% 69.3%
428579 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.63 56.0 4.36e-01 100.0% 68.6%
4932663 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 52.0 4.37e-01 93.5% 62.7%
3665168 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 52.0 4.24e-01 93.5% 65.0%
5007084 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.62 55.0 4.65e-01 100.0% 69.5%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.62 52.0 4.57e-01 93.5% 63.3%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 54.0 4.92e-01 100.0% 77.6%
4018672 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.62 45.0 3.69e-01 77.4% 44.3%
4288082 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.62 51.0 4.56e-01 93.5% 76.7%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.16e-01 80.6% 60.0%
3270538 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.61 51.0 4.09e-01 93.5% 57.6%
4966530 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 48.0 4.68e-01 93.5% 78.6%
4298531 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.59 50.0 4.21e-01 100.0% 82.6%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 51.0 4.56e-01 100.0% 71.1%
4391792 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 50.0 4.46e-01 100.0% 69.5%
4013718 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 48.0 3.61e-01 100.0% 65.7%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.18e-01 77.4% 34.1%
5043858 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 39.0 3.06e-01 72.6% 33.6%
None 0.57 47.0 3.02e-01 93.5% 22.5%
3513418 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 37.0 4.23e-01 98.4% 95.6%
3486144 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 45.0 2.85e-01 88.7% 18.4%
1 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.54 39.0 2.84e-01 100.0% 24.6%
3515226 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.52 42.0 3.69e-01 100.0% 58.1%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.94e-01 100.0% 77.3%
3705036 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 3.12e-01 100.0% 96.3%