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IMGVR_UViG_3300025167_000473-3300025167-Ga0209642_100150856
Arc-VirIMGVR_UViG_3300025167_000473-3300025167-Ga0209642_100150856
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-49
Domain cluster:
rep: AY587007.1__AAX12097.1__X__00160__D2-52
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 30.6 | 2.80e-07 | 89.8% | 93.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.84 | 74.0 | 5.73e-01 | 100.0% | 47.2% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.68 | 59.0 | 4.16e-01 | 100.0% | 30.2% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.64 | 54.0 | 4.00e-01 | 100.0% | 60.6% |
| 3plwA00 | 3.30.40.190 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.64 | 55.0 | 4.29e-01 | 100.0% | 74.5% |
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.52 | 41.0 | 2.51e-01 | 100.0% | 69.7% |
| 1z8gA01 | 3.10.250.10 | Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain | 0.52 | 39.0 | 3.19e-01 | 87.8% | 88.5% |
| 1wgmA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 36.0 | 3.16e-01 | 77.6% | 49.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.87 | 72.0 | 6.51e-01 | 89.8% | 70.8% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.87 | 77.0 | 5.79e-01 | 100.0% | 44.3% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.86 | 79.0 | 6.44e-01 | 100.0% | 63.5% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.84 | 71.0 | 5.21e-01 | 100.0% | 36.8% |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.82 | 74.0 | 5.60e-01 | 100.0% | 61.8% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 68.0 | 5.91e-01 | 100.0% | 82.7% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.73 | 64.0 | 5.85e-01 | 100.0% | 96.9% |
| 3695527 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.72 | 60.0 | 4.64e-01 | 100.0% | 54.2% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 60.0 | 4.98e-01 | 100.0% | 66.0% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.68 | 59.0 | 4.16e-01 | 100.0% | 30.2% |
| 2439650 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.61 | 42.0 | 3.65e-01 | 100.0% | 44.4% |
| 3691694 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.61 | 40.0 | 3.02e-01 | 71.4% | 27.2% |
| 3606831 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 41.0 | 2.59e-01 | 71.4% | 20.9% |
| 3930570 | 376.1.1.97 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_ZNF598 | 0.59 | 47.0 | 3.33e-01 | 91.8% | 28.2% |
| 2323913 | 378.1.1.24 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DNase_NucA_NucB | 0.55 | 46.0 | 3.67e-01 | 100.0% | 46.8% |
| 5054925 | 7576.1.1.1 ↗ | a/b three-layered sandwiches › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain › Gingipain R extra N-terminal alpha/beta domain › Peptidase_C25 | 0.53 | 37.0 | 2.57e-01 | 73.5% | 36.4% |
| 3807358 | 387.1.5.15 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP | 0.51 | 35.0 | 3.54e-01 | 75.5% | 72.9% |
| 3193830 | 304.9.1.46 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PHM7_cyt | 0.51 | 34.0 | 2.94e-01 | 71.4% | 78.9% |
| 145901 | 358.1.1.0 ↗ | a+b complex topology › SRCR-like › SRCR-like › SRCR-like | 0.51 | 38.0 | 3.05e-01 | 87.8% | 80.4% |