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IMGVR_UViG_3300025167_000740-3300025167-Ga0209642_100000961

Arc-Vir

IMGVR_UViG_3300025167_000740-3300025167-Ga0209642_100000961

Identity

Kingdom:
archaea

Quality

57.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
D2 high residues 201-280
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.68 49.0 4.20e-01 76.2% 85.0%
3ikhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 54.0 3.72e-01 96.2% 88.5%
3bf5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 56.0 4.01e-01 100.0% 97.1%
1xeaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 45.0 3.44e-01 76.2% 50.5%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.62 40.0 3.72e-01 92.5% 52.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 53.0 3.57e-01 96.2% 75.9%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 54.0 3.56e-01 100.0% 59.1%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 52.0 3.57e-01 97.5% 48.4%
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 53.0 3.65e-01 100.0% 59.0%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 44.0 3.13e-01 91.3% 24.1%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 53.0 3.62e-01 100.0% 57.1%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 52.0 3.52e-01 96.2% 92.3%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.60 44.0 4.36e-01 76.2% 87.1%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.44e-01 98.8% 38.8%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 52.0 3.58e-01 100.0% 56.8%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.47e-01 97.5% 79.8%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 42.0 3.19e-01 72.5% 68.3%
2qhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 51.0 3.56e-01 97.5% 89.6%
3uuwB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 42.0 3.28e-01 75.0% 52.7%
3wmyA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 50.0 3.49e-01 98.8% 68.9%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 52.0 3.55e-01 97.5% 85.2%
3iq0A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 51.0 3.50e-01 100.0% 58.0%
4h3vB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 41.0 2.98e-01 72.5% 72.3%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.59 46.0 3.63e-01 85.0% 68.8%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.59 41.0 3.36e-01 72.5% 84.6%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 49.0 3.47e-01 96.2% 62.1%
3ry7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 48.0 3.33e-01 96.2% 89.8%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 49.0 3.35e-01 98.8% 43.0%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.57 47.0 4.58e-01 91.3% 96.6%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.29e-01 100.0% 48.9%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 3.50e-01 76.2% 64.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.19e-01 97.5% 32.3%
3bdlA03 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.51e-01 76.2% 73.6%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.56 40.0 3.66e-01 76.2% 93.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 44.0 2.92e-01 87.5% 27.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.55 44.0 4.00e-01 86.3% 75.2%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 3.69e-01 98.8% 63.1%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 42.0 4.35e-01 87.5% 97.4%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 43.0 3.43e-01 87.5% 69.9%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 35.0 3.90e-01 71.2% 91.4%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.53 41.0 4.01e-01 86.3% 82.2%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 46.0 3.37e-01 100.0% 54.4%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 45.0 3.29e-01 100.0% 53.7%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 36.0 2.91e-01 75.0% 89.0%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.51 40.0 3.01e-01 90.0% 73.3%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 39.0 4.10e-01 88.7% 95.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 4.08e-01 96.2% 86.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586216 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.78 52.0 3.94e-01 73.8% 30.6%
3627160 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.76 48.0 4.28e-01 73.8% 46.0%
3930462 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.71 47.0 3.88e-01 73.8% 39.3%
3215840 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.69 45.0 3.16e-01 85.0% 20.8%
3458155 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 53.0 3.57e-01 88.7% 31.1%
3607693 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.55e-01 88.7% 26.2%
3228083 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 45.0 3.16e-01 85.0% 22.7%
4303960 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.63 45.0 2.99e-01 76.2% 33.7%
3943829 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.63 54.0 3.71e-01 96.2% 88.8%
3574768 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.63 51.0 4.27e-01 88.7% 79.3%
3597997 63.1.1.0 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.63 51.0 4.26e-01 87.5% 80.0%
5080093 5.1.5.232 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Reg_prop 0.63 53.0 3.17e-01 96.2% 24.3%
4990710 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.63 54.0 3.73e-01 98.8% 97.6%
3608369 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 52.0 3.53e-01 93.8% 39.7%
3175705 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 52.0 3.38e-01 93.8% 58.4%
3809272 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.61 54.0 3.71e-01 100.0% 90.1%
4472709 3939.1.1.185 ↗ alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › WD40, Beta-prop_NOL10_N 0.61 54.0 3.42e-01 100.0% 52.4%
3826594 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.61 53.0 3.67e-01 100.0% 48.6%
3928477 77.3.1.4 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.61 49.0 3.68e-01 87.5% 72.3%
3605755 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 51.0 3.33e-01 93.8% 50.0%
5075699 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 53.0 3.47e-01 100.0% 51.6%
3440815 5.1.11.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.60 54.0 3.56e-01 100.0% 72.4%
4977101 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.60 52.0 3.60e-01 100.0% 60.0%
3446490 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.60 51.0 3.36e-01 100.0% 89.5%
3893831 63.1.1.3 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.59 50.0 4.15e-01 93.8% 85.5%
5047179 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.59 51.0 3.60e-01 100.0% 68.5%
3994162 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.59 53.0 4.10e-01 98.8% 83.4%
3490544 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.59 50.0 3.35e-01 100.0% 61.9%
3819875 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 50.0 3.42e-01 100.0% 72.4%
None — 0.58 47.0 3.31e-01 88.7% 49.8%
3601989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.15e-01 97.5% 62.1%
3461790 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 50.0 3.39e-01 100.0% 71.6%
3383615 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 48.0 3.41e-01 100.0% 89.7%
3247159 63.1.1.8 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH, PRKCSH_1 0.57 47.0 3.76e-01 95.0% 75.7%
5079687 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.11e-01 96.2% 79.7%
3940247 4099.1.1.1 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.56 44.0 3.92e-01 88.7% 67.5%
3337399 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.55 43.0 3.81e-01 87.5% 60.0%
3669821 220.1.1.163 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7046 0.55 44.0 3.58e-01 87.5% 90.3%
3537640 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 46.0 3.07e-01 97.5% 35.5%
5023426 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 48.0 3.40e-01 100.0% 62.3%
4943983 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.55 48.0 3.05e-01 100.0% 37.2%
3706074 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.09e-01 100.0% 57.9%
4475261 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.54 47.0 4.67e-01 95.0% 89.4%
3719969 5.1.3.160 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.54 45.0 3.06e-01 97.5% 81.4%
3561693 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.53 41.0 3.41e-01 86.3% 84.0%
4953863 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 45.0 3.24e-01 100.0% 61.9%
3740383 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.52 42.0 2.79e-01 90.0% 20.3%
3576228 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 40.0 3.86e-01 82.5% 76.1%
4364399 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 38.0 3.71e-01 77.5% 81.1%
3669022 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 36.0 3.48e-01 76.2% 66.3%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 4.10e-01 92.5% 93.3%
D3 medium residues 110-200
PDB