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IMGVR_UViG_3300025174_000542-3300025174-Ga0209324_100072115
Arc-VirIMGVR_UViG_3300025174_000542-3300025174-Ga0209324_100072115
Identity
- Kingdom:
- archaea
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-82
Domain cluster:
rep: KC310805.1__AGK86665.1__S-CBP42_0013__00010__D12-82
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.64 | 48.0 | 3.38e-01 | 81.2% | 83.9% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 44.0 | 4.00e-01 | 72.5% | 55.0% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 32.0 | 2.76e-01 | 72.5% | 29.6% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.61 | 42.0 | 3.73e-01 | 72.5% | 52.1% |
| 3liuA01 | 2.60.40.3160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 43.0 | 3.93e-01 | 98.8% | 56.8% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 33.0 | 3.61e-01 | 96.2% | 73.8% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 45.0 | 3.55e-01 | 95.0% | 96.2% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 45.0 | 3.35e-01 | 100.0% | 68.4% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.51 | 35.0 | 3.48e-01 | 100.0% | 67.4% |
| 4o8uA00 | 3.30.420.440 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 | 0.51 | 43.0 | 3.16e-01 | 95.0% | 93.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946583 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.64 | 44.0 | 3.93e-01 | 72.5% | 50.4% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 44.0 | 3.79e-01 | 72.5% | 48.0% |
| 3739303 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 43.0 | 3.82e-01 | 72.5% | 48.3% |
| 4327417 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 42.0 | 3.74e-01 | 72.5% | 49.6% |
| 4948543 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 40.0 | 3.81e-01 | 70.0% | 57.9% |
| 3600531 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.60 | 38.0 | 4.49e-01 | 72.5% | 98.1% |
| 3471761 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.59 | 49.0 | 3.85e-01 | 96.2% | 89.5% |
| 3937161 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 41.0 | 3.95e-01 | 73.8% | 84.4% |
| 3397864 | 302.1.1.3 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › PF29551 | 0.58 | 52.0 | 3.91e-01 | 100.0% | 58.2% |
| 4648475 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.56 | 38.0 | 4.18e-01 | 72.5% | 93.3% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.56 | 47.0 | 3.12e-01 | 95.0% | 73.0% |
| 4443054 | 3115.1.1.9 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ | 0.54 | 45.0 | 4.02e-01 | 96.2% | 69.2% |
| 3726852 | 2004.1.1.685 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HET | 0.53 | 40.0 | 2.94e-01 | 83.7% | 41.2% |
| 3508713 | 382.1.1.25 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ | 0.53 | 45.0 | 3.97e-01 | 96.2% | 68.3% |
| 3434076 | 1118.1.1.1 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › NFACT-R_1 | 0.51 | 42.0 | 4.14e-01 | 96.2% | 90.6% |
| 2643927 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.51 | 35.0 | 3.46e-01 | 100.0% | 67.0% |